Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 78423755 . G A CCDS4046.1:NM_001713.2:c.986gGc>gAc_NP_001704.2:p.329G>D Homo sapiens betaine--homocysteine S-methyltransferase (BHMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4m3p 1 Q93088 99.75 0.0 X-RAY
 2014-06-18 GLY A:329 A:329 16.0 0.213 -155.4 166.5 3.0 0.04 0.173 D:Q93088:0.173
 HOH
 2.775
 O
 O
GLY B:329 B:329 15.0 0.2 -157.0 160.6 3.0 0.04 0.16 C:Q93088:0.147
A:Q93088:0.027
 HOH
 2.796
 O
 O
GLY C:329 C:329 15.0 0.2 -155.0 165.7 3.0 0.04 0.16 D:Q93088:0.013
B:Q93088:0.147
 HOH
 2.798
 O
 O
GLY D:329 D:329 15.0 0.2 -153.8 162.5 3.0 0.04 0.16 C:Q93088:0.013
A:Q93088:0.147
 HOH
 2.698
 O
 O
1lt7 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 GLY A:329 NA:NA DO NA DO DO DO NA NA NA
GLY B:329 NA:NA DO NA DO DO DO NA NA NA
1lt8 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 GLY A:329 A:329 12.0 0.16 40.4 -92.6 12.0 0.16 0.0 HOH
 4.695
 O
 O
GLY B:329 B:329 13.0 0.173 -151.7 150.4 13.0 0.173 0.0 HOH
 2.547
 O
 O
1umy 1 O09171 93.09 0.0 X-RAY
 2004-05-06 GLY A:329 A:329 22.0 0.293 -155.2 173.1 7.0 0.093 0.2 C:O09171:0.187
B:O09171:0.027
 HOH
 2.761
 O
 O
GLY B:329 B:329 21.0 0.28 -154.8 171.7 5.0 0.067 0.213 D:O09171:0.173
A:O09171:0.04
 HOH
 3.149
 O
 O
GLY C:329 C:329 22.0 0.293 -154.7 172.5 5.0 0.067 0.226 D:O09171:0.027
A:O09171:0.2
 HOH
 3.539
 O
 O
GLY D:329 D:329 20.0 0.267 -153.9 170.7 6.0 0.08 0.187 C:O09171:0.027
B:O09171:0.147
 HOH
 2.935
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q93088-f1 1 Q93088 100.0 0.0 GLY A:329 A:329 25.0 0.333 -66.1 128.4