Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 78423791 . C A CCDS4046.1:NM_001713.2:c.1022cCc>cAc_NP_001704.2:p.341P>H Homo sapiens betaine--homocysteine S-methyltransferase (BHMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4m3p 1 Q93088 99.75 0.0 X-RAY
 2014-06-18 PRO A:341 A:341 70.0 0.483 H -62.8 -34.4 45.0 0.31 0.173 B:Q93088:0.172
 HOH
 5.851
 O
 O
PRO B:341 B:341 74.0 0.51 H -59.6 -31.9 48.0 0.331 0.179 A:Q93088:0.179
 HOH
 7.071
 O
 O
PRO C:341 C:341 69.0 0.476 H -57.7 -34.7 43.0 0.297 0.179 D:Q93088:0.179
 HOH
 2.787
 O
 O
PRO D:341 D:341 69.0 0.476 H -49.0 -46.3 48.0 0.331 0.145 C:Q93088:0.145
 HOH
 2.685
 O
 O
1lt7 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 PRO A:341 NA:NA DO NA DO DO DO NA NA NA
PRO B:341 B:341 69.0 0.476 H -56.7 -49.2 69.0 0.476 0.0 HOH
 5.882
 O
 O
1lt8 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 PRO A:341 A:341 82.0 0.566 H -56.6 -55.8 82.0 0.566 0.0 CBH
HOH
 9.789
2.797
 N
O
 O24
O
PRO B:341 B:341 67.0 0.462 H -57.0 -53.4 67.0 0.462 0.0 HOH
 2.996
 N
 O
1umy 1 O09171 93.09 0.0 X-RAY
 2004-05-06 PRO A:341 A:341 68.0 0.469 H -67.2 -45.2 55.0 0.379 0.09 B:O09171:0.09
 HOH
 3.476
 O
 O
PRO B:341 B:341 67.0 0.462 H -67.1 -45.6 67.0 0.462 0.0 HOH
 3.678
 CD
 O
PRO C:341 C:341 68.0 0.469 H -66.6 -47.9 67.0 0.462 0.007 D:O09171:0.007
 HOH
 2.887
 CG
 O
PRO D:341 D:341 68.0 0.469 H -66.2 -46.9 68.0 0.469 0.0 HOH
 5.802
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q93088-f1 1 Q93088 100.0 0.0 PRO A:341 A:341 67.0 0.462 H -62.0 -38.4