Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 78426761 . G A CCDS4046.1:NM_001713.2:c.1043aGg>aAg_NP_001704.2:p.348R>K Homo sapiens betaine--homocysteine S-methyltransferase (BHMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4m3p 1 Q93088 99.75 0.0 X-RAY
 2014-06-18 ARG A:348 A:348 109.0 0.484 S -146.0 148.7 109.0 0.484 0.0 HOH
 2.872
 HA
 O
ARG B:348 B:348 109.0 0.484 S -144.2 160.4 109.0 0.484 0.0 HOH
 1.728
 HH11
 O
ARG C:348 C:348 106.0 0.471 S -140.5 145.4 106.0 0.471 0.0 HOH
 2.501
 HB3
 O
ARG D:348 D:348 106.0 0.471 S -136.8 146.4 103.0 0.458 0.013 A:Q93088:0.013
 HOH
 2.355
 HH11
 O
1lt7 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 ARG A:348 A:348 147.0 0.653 -95.0 124.4 147.0 0.653 0.0 HOH
 6.831
 N
 O
ARG B:348 B:348 137.0 0.609 S -155.2 125.3 137.0 0.609 0.0 HOH
 2.962
 CD
 O
1lt8 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 ARG A:348 A:348 125.0 0.556 -107.5 129.0 125.0 0.556 0.0 HOH
 2.678
 C
 O
ARG B:348 B:348 118.0 0.524 S -163.9 152.2 118.0 0.524 0.0 HOH
 2.459
 NH2
 O
1umy 1 O09171 93.09 0.0 X-RAY
 2004-05-06 ARG A:348 A:348 118.0 0.524 S -146.1 139.6 117.0 0.52 0.004 C:O09171:0.004
 HOH
 2.305
 NE
 O
ARG B:348 B:348 116.0 0.516 S -143.9 140.1 116.0 0.516 0.0 HOH
 2.935
 NH2
 O
ARG C:348 C:348 118.0 0.524 S -144.6 140.6 116.0 0.516 0.008 A:O09171:0.009
 HOH
 2.775
 CZ
 O
ARG D:348 D:348 118.0 0.524 S -145.6 140.1 116.0 0.516 0.008 B:O09171:0.009
 HOH
 2.556
 NH2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q93088-f1 1 Q93088 100.0 0.0 ARG A:348 A:348 123.0 0.547 S -159.0 149.3