Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 78426777 . G A CCDS4046.1:NM_001713.2:c.1059gaG>gaA_NP_001704.2:p.353E>E Homo sapiens betaine--homocysteine S-methyltransferase (BHMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4m3p 1 Q93088 99.75 0.0 X-RAY
 2014-06-18 GLU A:353 A:353 108.0 0.568 H -65.0 -29.4 106.0 0.558 0.01 D:Q93088:0.011
 HOH
 3.066
 O
 O
GLU B:353 B:353 105.0 0.553 H -67.4 -32.4 105.0 0.553 0.0 HOH
 3.442
 HG3
 O
GLU C:353 C:353 108.0 0.568 H -66.0 -32.4 108.0 0.568 0.0 HOH
 3.391
 HA
 O
GLU D:353 D:353 113.0 0.595 H -68.3 -30.2 92.0 0.484 0.111 A:Q93088:0.111
 HOH
 2.780
 HG3
 O
1lt7 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 GLU A:353 A:353 108.0 0.568 H -65.5 -19.6 108.0 0.568 0.0 CIT
HOH
 7.208
2.389
 O
O
 O5
O
GLU B:353 B:353 90.0 0.474 H -64.6 -27.0 90.0 0.474 0.0 CIT
HOH
 9.767
3.305
 O
O
 O2
O
1lt8 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 GLU A:353 A:353 87.0 0.458 H -83.7 -7.4 87.0 0.458 0.0 CIT
HOH
 9.602
2.734
 O
OE2
 O1
O
GLU B:353 B:353 92.0 0.484 T -79.1 -12.6 92.0 0.484 0.0 CIT
HOH
 9.624
2.639
 O
OE2
 O2
O
1umy 1 O09171 93.09 0.0 X-RAY
 2004-05-06 GLN A:353 A:353 104.0 0.578 H -72.3 -21.1 86.0 0.478 0.1 C:O09171:0.1
 HOH
 2.954
 NE2
 O
GLN B:353 B:353 106.0 0.589 H -72.4 -21.6 89.0 0.494 0.095 D:O09171:0.094
 HOH
 2.868
 NE2
 O
GLN C:353 C:353 106.0 0.589 H -71.7 -21.3 78.0 0.433 0.156 A:O09171:0.156
 HOH
 5.324
 OE1
 O
GLN D:353 D:353 106.0 0.589 H -70.5 -22.0 94.0 0.522 0.067 B:O09171:0.067
 HOH
 2.594
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q93088-f1 1 Q93088 100.0 0.0 GLU A:353 A:353 112.0 0.589 H -65.2 -30.2