Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 88100602 . C A CCDS47244.1:NM_001131005.2:c.71aGg>aTg_NP_001124477.1:p.24R>M Homo sapiens myocyte enhancer factor 2C (MEF2C), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5f28 1 Q8CFN5 97.8 5e-59 X-RAY
2016-07-13 ARG A:24 A:24 214.0 0.951 H -59.6 -35.5 87.0 0.387 0.564 B:Q8CFN5:0.564
HOH
4.759
CD
O
ARG B:24 B:24 202.0 0.898 H -73.7 -29.9 83.0 0.369 0.529 A:Q8CFN5:0.529
ARG C:24 C:24 194.0 0.862 H -62.0 -36.8 NA NA NA
ARG D:24 D:24 206.0 0.916 H -74.5 -30.6 NA NA NA
3kov 1 Q02078 96.67 1e-57 X-RAY
2010-02-16 ARG A:23 A:24 158.0 0.702 H -65.7 -38.7 63.0 0.28 0.422 B:Q02078:0.422
DT
DT
DA
DT
DA
DA
DA
DA
DT
DA
DG
8.048
7.370
4.816
2.768
4.186
7.627
5.478
5.597
4.233
2.744
9.182
NH2
NH2
CG
CG
NE
NH2
NH2
NH1
O
NE
NE
O3'
O5'
O3'
OP1
OP1
O3'
C5'
OP1
OP1
OP1
OP2
ARG B:23 B:24 158.0 0.702 H -63.8 -40.6 60.0 0.267 0.435 A:Q02078:0.436
DT
DT
DA
DT
DA
DA
DA
DA
DA
DT
DA
DG
8.384
7.371
4.771
2.697
3.280
9.635
7.876
5.904
6.258
4.059
3.545
8.834
NH2
NH2
CG
NH1
NH2
NE
NH2
NH2
O
CG
NH2
NE
O3'
OP1
O3'
OP1
OP1
OP2
O3'
C4'
O3'
OP1
OP1
OP2
ARG C:23 I:24 156.0 0.693 H -65.6 -37.9 NA NA NA
ARG D:23 J:24 157.0 0.698 H -67.4 -37.2 NA NA NA
3p57 1 Q02078 96.67 1e-57 X-RAY
2011-08-10 ARG A:23 A:24 151.0 0.671 H -68.7 -27.4 60.0 0.267 0.404 B:Q02078:0.404
DA
DT
DA
DA
DA
DA
DA
HOH
6.020
3.853
2.655
9.264
7.623
5.852
6.535
2.738
CG
CG
NH2
NH2
NH2
NH2
NH1
O
O3'
OP1
OP1
OP2
O3'
C5'
OP1
O
ARG B:23 B:24 157.0 0.698 H -69.4 -29.2 64.0 0.284 0.414 A:Q02078:0.413
DT
DT
DA
DA
DT
DA
DG
HOH
7.847
6.218
6.586
6.000
3.884
2.600
9.383
2.714
NH2
NH2
NH1
CG
CG
NH2
NH2
O
O3'
C5'
OP1
O3'
OP1
OP1
OP2
O
ARG C:23 C:24 156.0 0.693 H -57.9 -26.7 65.0 0.289 0.404 D:Q02078:0.404
DT
DT
DA
DA
DT
DA
DG
HOH
7.641
6.170
6.537
6.064
3.860
2.566
9.110
2.948
NH2
NH2
NH1
NH1
NH1
NH2
NH2
NH1
O3'
C5'
OP1
O3'
OP1
OP1
OP2
O
ARG D:23 D:24 151.0 0.671 H -66.4 -31.9 59.0 0.262 0.409 C:Q02078:0.409
DA
DT
DA
DA
DA
DA
DA
HOH
6.039
3.843
2.632
9.383
7.639
6.166
6.855
2.723
CG
CG
NH2
NH2
NH2
NH2
NH1
NH1
O3'
OP1
OP1
OP2
O3'
C5'
OP1
O
ARG E:23 I:24 153.0 0.68 H -78.8 -26.3 60.0 0.267 0.413 F:Q02078:0.413
DA
DT
DT
DA
DA
DT
DA
DG
HOH
8.789
7.806
6.188
6.480
5.926
3.710
2.654
9.559
2.629
N
NH2
NH2
NH1
CG
CG
NE
NE
O
O5'
O3'
C5'
OP1
O3'
OP1
OP1
OP2
O
ARG F:23 J:24 150.0 0.667 H -62.4 -30.0 66.0 0.293 0.374 E:Q02078:0.373
DA
DT
DA
DA
DA
DA
DA
HOH
6.101
3.997
2.657
9.205
7.615
6.296
6.684
2.691
CG
CG
NH2
NH2
NH2
NH2
NH1
O
O3'
OP1
OP1
P
O3'
C5'
OP1
O
6byy 1 Q02078,Q02080 89.47 3e-57 X-RAY
2018-01-31 ARG A:24 A:24 149.0 0.662 H -77.8 -26.7 60.0 0.267 0.395 B:Q02078+Q02080:0.396
DT
DT
DA
DA
DT
DA
DG
HOH
7.800
6.062
6.573
5.723
3.676
2.715
9.709
2.814
NH2
NH2
NH1
CG
CG
NH2
NH2
O
O3'
C5'
OP1
O3'
OP1
OP1
OP2
O
ARG B:24 B:24 154.0 0.684 H -70.9 -32.9 65.0 0.289 0.395 A:Q02078+Q02080:0.396
DA
DT
DA
DA
DA
DA
DA
1PG
HOH
5.816
3.645
2.730
9.614
7.489
6.114
6.707
8.869
2.802
CG
CG
NH2
NH2
NH2
NH2
NH1
N
NH2
O3'
OP1
OP1
OP2
O3'
C5'
OP1
O4
O
ARG C:24 C:24 168.0 0.747 H -67.8 -34.5 NA NA NA
ARG D:24 D:24 154.0 0.684 H -70.0 -37.7 NA NA NA
6wc2 1 Q02078,Q02080 89.47 3e-57 X-RAY
2020-07-22 ARG A:24 A:24 153.0 0.68 H -72.4 -28.2 66.0 0.293 0.387 B:Q02078+Q02080:0.387
DA
DT
DA
DG
DT
DT
DT
HOH
5.976
3.792
2.614
9.453
7.965
6.180
6.647
2.834
CG
CG
NH2
NH2
NH2
NH2
NH1
O
O3'
OP1
OP1
OP2
O3'
C5'
OP1
O
ARG B:24 B:24 151.0 0.671 H -73.6 -27.7 59.0 0.262 0.409 A:Q02078+Q02080:0.409
DA
DA
DA
DT
DA
DA
DG
HOH
7.975
6.250
6.358
5.795
3.773
2.803
9.691
2.915
NH2
NH2
NH1
CG
CG
NE
NH2
O
O3'
C5'
OP1
O3'
OP1
OP1
P
O
ARG C:24 C:24 153.0 0.68 H -72.6 -29.1 NA NA NA
ARG D:24 D:24 153.0 0.68 H -75.0 -25.9 NA NA NA
ARG I:24 I:24 151.0 0.671 H -73.7 -28.1 NA NA NA
ARG J:24 J:24 152.0 0.676 H -71.5 -30.0 NA NA NA
1tqe 3 Q02080 86.02 8e-56 X-RAY
2004-12-21 ARG E:24 P:24 167.0 0.742 H -62.0 -56.2 67.0 0.298 0.444 F:Q02080:0.444
DA
DT
DA
DA
DA
DA
5.759
3.580
3.010
7.773
6.536
6.832
CG
CG
NH2
NH2
NH2
NH2
O3'
OP1
OP1
O3'
C4'
OP1
ARG F:24 Q:24 166.0 0.738 H -63.2 -53.7 61.0 0.271 0.467 E:Q02080:0.467
DT
DT
DA
DA
DT
DA
DG
7.732
6.737
6.983
5.724
3.717
3.254
9.890
NH2
NH2
NH1
CG
CG
NH2
NE
O3'
O3'
OP1
O3'
OP1
OP1
OP2
ARG H:24 R:24 164.0 0.729 H -61.5 -57.1 NA NA NA
ARG I:24 S:24 167.0 0.742 H -61.8 -55.0 NA NA NA
6c9l 1 Q02080 86.02 8e-56 X-RAY
2018-02-07 ARG A:24 A:24 178.0 0.791 H -76.3 -31.7 78.0 0.347 0.444 B:Q02080:0.444
HOH
2.814
NH1
O
ARG B:24 B:24 192.0 0.853 H -73.6 -34.7 84.0 0.373 0.48 A:Q02080:0.48
HOH
2.734
NE
O
ARG C:24 C:24 189.0 0.84 H -74.0 -35.0 NA NA NA
ARG D:24 D:24 179.0 0.796 H -75.9 -31.7 NA NA NA
ARG E:24 E:24 189.0 0.84 H -76.0 -32.0 NA NA NA
ARG F:24 F:24 172.0 0.764 H -75.6 -32.1 NA NA NA
6bz1 1 Q02078,Q02080 88.42 9e-56 X-RAY
2018-02-07 ARG A:24 C:24 159.0 0.707 H -63.0 -38.3 52.0 0.231 0.476 B:Q02078+Q02080:0.476
DA
DT
DA
DA
DA
DA
DA
5.861
3.643
3.144
9.896
8.413
6.292
6.059
CG
CG
NE
NE
NH2
NH2
NH2
O3'
OP1
OP1
OP2
O3'
C4'
OP1
ARG B:24 D:24 155.0 0.689 H -62.6 -38.3 58.0 0.258 0.431 A:Q02078+Q02080:0.431
DT
DT
DA
DA
DT
DA
DG
8.408
6.377
6.927
5.864
3.901
2.839
9.312
NH2
NH2
NH2
CG
CG
NH2
NE
O3'
C4'
OP1
O3'
OP1
OP1
OP2
ARG E:24 A:24 151.0 0.671 H -62.9 -38.0 NA NA NA
ARG F:24 B:24 167.0 0.742 H -62.5 -38.8 NA NA NA
1n6j 3 Q02080 85.87 6e-55 X-RAY
2003-11-11 ARG C:23 A:24 154.0 0.684 H -71.0 -28.3 63.0 0.28 0.404 D:Q02080:0.404
DT
DT
DA
DA
DT
DA
DG
HOH
7.764
7.119
6.954
5.805
3.552
2.671
9.416
2.875
NH2
NH2
NH1
CG
CG
NH2
NH2
NH1
O3'
O3'
OP1
O3'
OP1
OP1
OP2
O
ARG D:23 B:24 154.0 0.684 H -69.6 -29.3 64.0 0.284 0.4 C:Q02080:0.4
DA
DT
DA
DA
DA
DA
DA
HOH
5.780
3.791
2.521
9.240
7.553
6.871
7.026
2.790
CG
CG
NH2
NH2
NH2
NH2
NH1
O
O3'
O5'
OP1
OP2
O3'
C4'
OP1
O
6wc5 1 Q02080 86.67 8e-54 X-RAY
2020-07-22 ARG A:23 A:24 156.0 0.693 H -73.2 -24.2 63.0 0.28 0.413 B:Q02080:0.413
DA
DT
DA
DG
DT
DT
DT
5.889
3.712
2.665
9.384
7.704
6.042
6.706
CG
CG
NH2
NH2
NH2
NH2
NH1
O3'
OP1
OP1
OP2
O3'
C5'
OP1
ARG B:23 B:24 170.0 0.756 H -72.5 -24.9 67.0 0.298 0.458 A:Q02080:0.458
DA
DA
DA
DT
DA
DA
DG
HOH
7.892
6.086
6.908
5.881
3.895
2.822
9.902
2.810
NH2
NH2
NH1
CG
CG
NE
NE
O
O3'
C5'
OP1
O3'
OP1
OP1
OP2
O
ARG C:23 C:24 156.0 0.693 H -74.1 -23.2 NA NA NA
ARG D:23 D:24 177.0 0.787 H -73.1 -24.4 NA NA NA
1egw 3 Q02078 98.7 9e-50 X-RAY
2000-03-20 ARG E:23 A:24 155.0 0.689 H -66.9 -29.8 65.0 0.289 0.4 F:Q02078:0.4
DT
DA
DT
DT
DA
DG
DT
DA
DA
DT
DA
DG
HOH
8.113
6.235
5.833
3.671
2.626
9.498
7.782
6.071
5.820
3.746
2.955
9.306
2.804
NH2
NH2
CG
CG
NH2
NH2
NH2
NH2
CG
CG
NH2
NE
O
O3'
C5'
O3'
OP1
OP1
OP2
O3'
C5'
O3'
OP1
OP1
OP2
O
ARG F:23 B:24 157.0 0.698 H -68.4 -28.9 66.0 0.293 0.405 E:Q02078:0.404
DT
DA
DT
DT
DA
DG
DT
DA
DA
DT
DA
DG
HOH
7.761
6.119
5.854
3.817
2.603
9.298
8.060
6.235
5.854
3.768
2.837
9.484
2.815
NH2
NH2
CG
CG
NH2
NE
NH2
NH2
CG
CG
NE
NH2
NH1
O3'
C5'
O3'
OP1
OP1
OP2
O3'
C5'
O3'
OP1
OP1
OP2
O
ARG G:23 C:24 153.0 0.68 H -68.3 -29.2 NA NA NA
ARG H:23 D:24 156.0 0.693 H -69.2 -28.0 NA NA NA
3mu6 1 Q02078 97.18 2e-43 X-RAY
2011-11-02 ARG A:23 A:24 162.0 0.72 H -69.9 -27.5 68.0 0.302 0.418 B:Q02078:0.418
DT
DT
DA
DG
DT
DA
DA
5.895
3.680
2.572
9.405
8.072
6.371
6.510
CG
CG
NH2
NH2
NH2
NH2
NH1
O3'
OP1
OP1
OP2
O3'
C5'
OP1
ARG B:23 B:24 160.0 0.711 H -68.1 -27.6 68.0 0.302 0.409 A:Q02078:0.409
DT
DA
DT
DA
DT
DA
DG
8.104
6.338
6.659
5.904
3.776
2.621
9.471
NH2
NH2
NH1
CG
CG
NH2
NH2
O3'
C5'
OP1
O3'
OP1
OP1
OP2
ARG E:23 C:24 156.0 0.693 H -67.7 -28.1 NA NA NA
ARG F:23 D:24 158.0 0.702 H -66.5 -28.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q06413-f1 1 Q06413 100.0 0.0 ARG A:24 A:24 142.0 0.631 H -70.7 -38.8