Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 88100605 . T A CCDS47244.1:NM_001131005.2:c.68aAg>aTg_NP_001124477.1:p.23K>M Homo sapiens myocyte enhancer factor 2C (MEF2C), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5f28 1 Q8CFN5 97.8 5e-59 X-RAY
2016-07-13 LYS A:23 A:23 188.0 0.94 H -70.7 -43.2 188.0 0.94 0.0 HOH
5.040
O
O
LYS B:23 B:23 156.0 0.78 H -69.7 -46.9 156.0 0.78 0.0
LYS C:23 C:23 157.0 0.785 H -84.6 -34.1 NA NA NA
LYS D:23 D:23 168.0 0.84 H -74.2 -40.3 NA NA NA
3kov 1 Q02078 96.67 1e-57 X-RAY
2010-02-16 LYS A:22 A:23 133.0 0.665 H -62.5 -57.8 133.0 0.665 0.0 DA
DA
DC
DT
DA
DT
DA
DA
DG
DT
DC
DT
DT
DA
DA
DT
DA
DG
DT
9.248
7.460
6.548
8.509
6.593
3.283
2.765
4.471
7.872
5.622
6.528
6.164
7.768
8.468
6.709
4.376
3.083
4.354
7.689
CD
CD
CD
CD
O
NZ
NZ
NZ
NZ
CD
CD
NZ
NZ
NZ
O
O
NZ
NZ
NZ
N7
N6
N4
O4
C3'
C2'
N7
N6
O6
O2
N4
O4
O4
N1
O3'
OP2
C8
N7
O4
LYS B:22 B:23 131.0 0.655 H -63.8 -58.8 131.0 0.655 0.0 DA
DA
DC
DA
DT
DA
DA
DG
DT
DC
DT
DT
DA
DA
DT
DA
DG
DT
9.354
7.398
7.989
6.254
3.670
2.690
4.191
6.811
7.612
6.642
6.418
7.934
9.144
6.672
4.571
2.901
4.747
6.899
CD
CD
CD
O
NZ
NZ
NZ
NZ
CD
CD
NZ
NZ
NZ
O
NZ
NZ
NZ
NZ
N6
N6
N4
O3'
C2'
N7
N6
O6
C7
N4
O4
O4
N1
O3'
O3'
C8
N7
O4
LYS C:22 I:23 133.0 0.665 H -65.1 -57.4 NA NA NA
LYS D:22 J:23 133.0 0.665 H -65.6 -56.0 NA NA NA
3p57 1 Q02078 96.67 1e-57 X-RAY
2011-08-10 LYS A:22 A:23 144.0 0.72 H -62.7 -52.0 144.0 0.72 0.0 DA
DT
DA
DA
DG
DA
DT
DT
DC
DT
DT
DA
HOH
6.549
3.323
2.596
4.101
6.270
9.338
9.209
7.018
5.873
5.901
7.348
9.174
3.100
O
CD
NZ
NZ
NZ
NZ
N
CE
NZ
NZ
NZ
NZ
CE
O3'
C2'
N7
N6
O6
N6
C2'
C7
N4
O4
O4
N1
O
LYS B:22 B:23 142.0 0.71 H -60.7 -54.9 142.0 0.71 0.0 DA
DA
DC
DT
DA
DA
DT
DA
DG
DT
DT
HOH
7.810
5.818
5.562
7.419
9.113
6.521
3.454
2.595
3.929
6.387
9.490
2.553
CE
NZ
CE
NZ
NZ
O
CD
NZ
NZ
NZ
NZ
NZ
N7
N6
N4
O4
N1
O3'
C2'
N7
O6
O4
O4
O
LYS C:22 C:23 146.0 0.73 H -64.5 -59.4 146.0 0.73 0.0 DA
DA
DC
DT
DA
DA
DT
DA
DG
DT
DT
HOH
8.213
5.756
5.917
7.563
9.369
6.822
3.599
2.660
4.285
6.016
9.494
3.340
CE
NZ
NZ
NZ
NZ
O
CD
NZ
NZ
NZ
NZ
CE
N7
N6
N4
O4
N1
O3'
C2'
N7
O6
O4
O4
O
LYS D:22 D:23 150.0 0.75 H -65.7 -53.1 150.0 0.75 0.0 DA
DT
DA
DA
DG
DA
DT
DC
DT
DT
DA
HOH
6.382
3.888
3.301
3.113
4.450
8.482
7.425
4.830
5.031
7.718
9.668
3.779
O
O
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
CG
O3'
OP2
N7
N6
O6
N1
N3
N4
O4
O4
C2
O
LYS E:22 I:23 151.0 0.755 H -62.8 -50.0 151.0 0.755 0.0 DA
DA
DA
DC
DT
DA
DA
DT
DA
DG
DT
DT
HOH
6.553
5.360
5.012
6.230
8.113
9.350
6.359
3.861
3.275
3.574
3.953
6.981
4.997
N
CE
NZ
NZ
NZ
NZ
O
O
NZ
NZ
NZ
NZ
N
O5'
N6
N6
N4
O4
N1
O3'
OP2
N7
N7
O4
O4
O
LYS F:22 J:23 146.0 0.73 H -61.4 -59.2 146.0 0.73 0.0 DA
DT
DA
DA
DG
DA
DT
DC
DT
DT
DA
HOH
6.452
3.405
2.862
3.799
6.359
9.487
7.939
5.663
5.966
8.060
9.506
2.930
O
CD
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
O
O3'
C2'
N7
N6
O6
N6
C7
N4
O4
O4
N1
O
6byy 1 Q02078,Q02080 89.47 3e-57 X-RAY
2018-01-31 LYS A:23 A:23 132.0 0.66 H -69.1 -45.6 132.0 0.66 0.0 DA
DA
DC
DT
DA
DA
DT
DA
DG
DT
DT
HOH
8.527
6.194
6.033
7.640
9.404
6.575
3.520
2.872
4.210
6.644
9.876
2.447
NZ
NZ
NZ
NZ
NZ
O
CD
NZ
NZ
NZ
NZ
NZ
N6
N6
N4
O4
N1
O3'
C2'
N7
O6
O4
O4
O
LYS B:23 B:23 147.0 0.735 H -74.0 -45.6 147.0 0.735 0.0 DA
DT
DA
DA
DG
DA
DT
DC
DT
DT
DA
1PG
HOH
6.471
3.946
2.775
3.520
6.234
9.503
8.275
6.425
5.732
7.365
8.943
6.846
2.895
O
O
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
N
NZ
O3'
OP2
N7
N6
O6
N6
O4
N4
O4
O4
N1
C8
O
LYS C:23 C:23 138.0 0.69 H -56.7 -53.0 NA NA NA
LYS D:23 D:23 151.0 0.755 H -74.5 -50.1 NA NA NA
6wc2 1 Q02078,Q02080 89.47 3e-57 X-RAY
2020-07-22 LYS A:23 A:23 148.0 0.74 H -63.9 -52.4 148.0 0.74 0.0 DA
DT
DA
DG
DT
DG
DC
DA
DC
DT
DA
HOH
6.602
4.090
3.465
2.946
4.149
7.504
6.674
4.558
4.845
7.201
9.673
5.395
O
O
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
O
O3'
OP2
N7
O6
O4
O6
N4
N6
N4
O4
N1
O
LYS B:23 B:23 152.0 0.76 H -62.7 -52.4 152.0 0.76 0.0 DT
DT
DT
DC
DT
DT
DT
DA
DA
DG
DA
DA
HOH
9.488
6.644
5.273
5.017
7.157
9.850
6.431
3.932
3.083
3.081
5.856
9.113
3.066
NZ
NZ
NZ
NZ
NZ
NZ
O
O
NZ
NZ
NZ
NZ
NZ
C7
C7
O4
N4
O4
N3
O3'
OP2
N7
O6
N6
N6
O
LYS C:23 C:23 160.0 0.8 H -65.0 -53.3 NA NA NA
LYS D:23 D:23 148.0 0.74 H -61.3 -53.6 NA NA NA
LYS I:23 I:23 150.0 0.75 H -64.8 -51.5 NA NA NA
LYS J:23 J:23 157.0 0.785 H -64.5 -52.7 NA NA NA
1tqe 3 Q02080 86.02 8e-56 X-RAY
2004-12-21 LYS E:23 P:23 152.0 0.76 H -57.0 -57.8 152.0 0.76 0.0 DA
DT
DA
DA
DG
DC
DT
DT
DG
DC
DT
DT
DA
6.884
4.370
2.902
3.122
5.044
8.808
9.355
9.982
6.923
4.794
4.460
6.245
8.558
O
CD
NZ
NZ
NZ
NZ
N
CE
CE
NZ
NZ
NZ
NZ
O3'
C2'
N7
N6
O6
N4
O5'
C7
N7
N4
O4
O4
N1
LYS F:23 Q:23 153.0 0.765 H -57.3 -57.4 153.0 0.765 0.0 DA
DA
DA
DG
DC
DT
DA
DA
DT
DA
DG
DC
DT
9.803
7.033
6.753
4.383
4.609
6.966
9.304
6.830
4.339
3.199
2.783
4.821
7.821
N
CE
NZ
NZ
NZ
NZ
NZ
O
O
NZ
NZ
NZ
NZ
C2'
C2
N6
O6
N4
O4
C2
O3'
OP2
N7
O6
N4
O4
LYS H:23 R:23 154.0 0.77 H -57.3 -57.9 NA NA NA
LYS I:23 S:23 153.0 0.765 H -56.5 -58.6 NA NA NA
6c9l 1 Q02080 86.02 8e-56 X-RAY
2018-02-07 LYS A:23 A:23 153.0 0.765 H -57.0 -48.5 153.0 0.765 0.0 HOH
2.521
NZ
O
LYS B:23 B:23 152.0 0.76 H -56.9 -48.2 152.0 0.76 0.0 HOH
2.731
O
O
LYS C:23 C:23 151.0 0.755 H -57.5 -47.4 NA NA NA
LYS D:23 D:23 152.0 0.76 H -57.2 -48.6 NA NA NA
LYS E:23 E:23 150.0 0.75 H -57.4 -47.7 NA NA NA
LYS F:23 F:23 152.0 0.76 H -57.5 -47.7 NA NA NA
6bz1 1 Q02078,Q02080 88.42 9e-56 X-RAY
2018-02-07 LYS A:23 C:23 134.0 0.67 H -70.7 -47.7 134.0 0.67 0.0 DA
DT
DA
DA
DG
DA
DT
DC
DT
DT
DA
6.308
3.481
2.829
4.604
6.785
9.301
7.180
5.795
5.990
8.326
9.404
O
CD
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
O3'
C2'
N7
N6
O6
N6
C7
N4
O4
O4
N1
LYS B:23 D:23 139.0 0.695 H -71.5 -47.6 139.0 0.695 0.0 DA
DA
DC
DT
DA
DA
DT
DA
DG
DT
8.997
5.606
5.760
7.912
9.282
6.251
3.481
2.812
3.776
5.488
NZ
NZ
NZ
NZ
NZ
O
CD
NZ
NZ
NZ
N7
N6
N4
O4
N1
O3'
C2'
N7
O6
O4
LYS E:23 A:23 136.0 0.68 H -71.3 -47.5 NA NA NA
LYS F:23 B:23 138.0 0.69 H -70.7 -47.5 NA NA NA
1n6j 3 Q02080 85.87 6e-55 X-RAY
2003-11-11 LYS C:22 A:23 138.0 0.69 H -76.9 -38.8 138.0 0.69 0.0 DA
DG
DC
DT
DA
DA
DT
DA
DG
DC
DT
HOH
7.582
5.277
4.958
7.232
9.251
6.551
3.991
3.554
3.918
5.063
8.153
2.633
NZ
NZ
NZ
NZ
NZ
O
CD
NZ
NZ
NZ
NZ
NZ
N6
O6
N4
O4
N1
O3'
C2'
N7
O6
N4
O4
O
LYS D:22 B:23 138.0 0.69 H -78.7 -39.7 138.0 0.69 0.0 DA
DT
DA
DA
DG
DC
DG
DC
DT
DT
DA
HOH
6.607
4.073
3.383
3.457
4.869
8.712
8.820
5.182
4.776
6.879
9.093
2.902
O
O
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
O
O3'
OP2
N7
N6
O6
N4
N7
N4
O4
O4
N1
O
6wc5 1 Q02080 86.67 8e-54 X-RAY
2020-07-22 LYS A:22 A:23 154.0 0.77 H -57.7 -56.9 154.0 0.77 0.0 DA
DT
DA
DG
DT
DG
DC
DA
DC
DT
DA
6.484
4.044
2.837
3.066
4.041
7.043
5.722
4.750
5.562
7.424
9.185
O
O
NZ
NZ
NZ
NZ
CE
NZ
NZ
NZ
NZ
O3'
OP2
N7
O6
O4
O6
N4
N6
N4
O4
C2
LYS B:22 B:23 145.0 0.725 H -58.1 -56.6 145.0 0.725 0.0 DT
DT
DT
DC
DT
DT
DA
DA
DG
DA
DA
HOH
9.903
6.877
5.135
4.603
7.237
6.291
3.818
3.812
3.620
6.589
9.856
5.656
NZ
NZ
NZ
NZ
NZ
O
CD
CE
NZ
NZ
NZ
O
C2'
C7
O4
N4
O4
O3'
C2'
N7
O6
N6
N6
O
LYS C:22 C:23 149.0 0.745 H -58.3 -56.6 NA NA NA
LYS D:22 D:23 152.0 0.76 H -57.5 -56.7 NA NA NA
1egw 3 Q02078 98.7 9e-50 X-RAY
2000-03-20 LYS E:22 A:23 148.0 0.74 H -69.3 -47.4 148.0 0.74 0.0 DA
DG
DC
DT
DA
DT
DT
DA
DG
DC
DT
DA
DG
DC
DT
DA
DA
DT
DA
DG
DC
DT
HOH
7.936
5.322
4.241
6.295
8.892
6.346
3.815
3.015
3.206
6.293
9.814
8.280
4.943
4.227
6.267
8.889
6.502
4.019
2.998
3.221
6.517
9.483
2.857
CD
NZ
NZ
NZ
NZ
O
O
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
O
O
NZ
NZ
NZ
NZ
NZ
N7
O6
N4
O4
N1
O3'
OP2
N7
O6
N4
O4
N6
O6
N4
O4
N1
O3'
OP2
N7
O6
N4
O4
O
LYS F:22 B:23 148.0 0.74 H -66.4 -51.3 148.0 0.74 0.0 DA
DG
DC
DT
DA
DT
DT
DA
DG
DC
DT
DA
DG
DC
DT
DA
DA
DT
DA
DG
DC
DT
HOH
7.719
4.700
4.111
6.225
8.694
6.514
4.007
2.821
2.862
6.080
9.320
7.439
5.205
4.176
6.231
8.700
6.288
3.723
2.838
2.862
6.037
9.477
2.588
CE
NZ
NZ
NZ
NZ
O
O
NZ
NZ
NZ
NZ
CE
NZ
NZ
NZ
NZ
O
O
NZ
NZ
NZ
NZ
CE
N7
O6
N4
O4
N1
O3'
OP2
N7
O6
N4
O4
N7
O6
N4
O4
N1
O3'
OP2
N7
O6
N4
O4
O
LYS G:22 C:23 148.0 0.74 H -64.7 -51.3 NA NA NA
LYS H:22 D:23 146.0 0.73 H -71.4 -46.0 NA NA NA
3mu6 1 Q02078 97.18 2e-43 X-RAY
2011-11-02 LYS A:22 A:23 154.0 0.77 H -61.8 -55.2 154.0 0.77 0.0 DT
DT
DA
DG
DC
DT
DA
DA
DG
DC
DT
DA
6.576
4.068
3.401
2.859
4.935
8.565
9.651
7.059
4.233
4.572
7.003
9.603
O
O
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
NZ
O3'
OP2
N7
O6
N4
O4
N7
N6
O6
N4
O4
N1
LYS B:22 B:23 151.0 0.755 H -61.3 -56.4 151.0 0.755 0.0 DA
DA
DG
DC
DT
DA
DA
DT
DA
DG
DC
DT
9.723
7.029
4.289
4.657
7.140
9.574
6.614
4.129
3.327
2.849
5.105
8.597
NZ
NZ
NZ
NZ
NZ
NZ
O
O
NZ
NZ
NZ
NZ
N7
N6
O6
N4
O4
N1
O3'
OP2
N7
O6
N4
O4
LYS E:22 C:23 151.0 0.755 H -62.4 -55.9 NA NA NA
LYS F:22 D:23 152.0 0.76 H -61.5 -57.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q06413-f1 1 Q06413 100.0 0.0 LYS A:23 A:23 154.0 0.77 H -72.0 -41.3