Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr6 | 87796104 | . | C | A | CCDS5007.1:NM_000735.3:c.137gGt>gTt_NP_000726.1:p.46G>V | Homo sapiens glycoprotein hormones, alpha polypeptide (CGA), transcript variant 2, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 7fig | 6 | P01215 | 100.0 | 7e-85 |
EM |
2021-09-29 | GLY | F:46 | X:22 | 88.0 | 1.0 | T | 78.4 | -0.5 | 88.0 | 1.0 | 0.0 |
NAG |
5.520 |
O |
O3 |
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| 7fii | 5 | P01215 | 100.0 | 7e-85 |
EM |
2021-09-29 | GLY | E:46 | X:22 | 93.0 | 1.0 | T | 80.2 | -1.6 | 93.0 | 1.0 | 0.0 | ||||||
| 7fih | 5 | P01215 | 100.0 | 6e-84 |
EM |
2021-09-29 | GLY | E:45 | X:22 | 83.0 | 1.0 | T | 79.6 | 6.4 | 83.0 | 1.0 | 0.0 | ||||||
| 1dz7 | 1 | P01215 | 100.0 | 7e-66 |
NMR |
2000-02-29 | GLY | A:22 | A:22 | 78.0 | 1.0 | T | 131.5 | 13.1 | 78.0 | 1.0 | 0.0 | ||||||
| 1e9j | 1 | P01215 | 100.0 | 7e-66 |
NMR |
2002-07-25 | GLY | A:22 | A:22 | 78.0 | 1.0 | T | 146.7 | -10.3 | 78.0 | 1.0 | 0.0 |
NAG |
4.380 |
O |
HO3 |
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| 1fl7 | 1 | P01215 | 100.0 | 7e-66 |
X-RAY |
2001-03-14 | GLY | A:22 | A:22 | 91.0 | 1.0 | T | 67.9 | -33.3 | 91.0 | 1.0 | 0.0 |
NAG NAG MAN |
4.744 5.691 8.805 |
O O O |
O3 O6 O2 |
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| GLY | C:22 | C:22 | 89.0 | 1.0 | T | 64.4 | 16.8 | NA | NA | NA | |||||||||||||
| 1hcn | 1 | P01215 | 100.0 | 7e-66 |
X-RAY |
1994-09-30 | GLY | A:22 | A:22 | 88.0 | 1.0 | T | 84.0 | -15.9 | 88.0 | 1.0 | 0.0 |
NAG HOH |
4.028 3.554 |
O N |
O3 O |
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| 1hd4 | 1 | P01215 | 100.0 | 7e-66 |
NMR |
2000-12-07 | GLY | A:22 | A:22 | 76.0 | 1.0 | T | 147.9 | -8.7 | 76.0 | 1.0 | 0.0 |
NAG NAG MAN NAG |
4.344 7.853 8.988 8.121 |
O O HA2 HA2 |
HO3 H2 O3 HO6 |
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| 1xwd | 1 | P01215 | 100.0 | 7e-66 |
X-RAY |
2005-01-25 | GLY | A:22 | A:22 | 88.0 | 1.0 | T | 88.6 | -25.8 | 88.0 | 1.0 | 0.0 |
NAG |
4.799 |
O |
O3 |
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| GLY | D:22 | D:22 | 74.0 | 0.987 | S | -74.3 | -59.0 | NA | NA | NA | |||||||||||||
| 4mqw | 1 | Q96QJ4 | 98.91 | 3e-65 |
X-RAY |
2014-04-09 | GLY | A:22 | A:22 | 88.0 | 1.0 | T | 78.4 | -33.7 | 88.0 | 1.0 | 0.0 |
NAG |
3.953 |
O |
O3 |
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| GLY | D:22 | D:22 | 85.0 | 1.0 | T | 87.5 | -24.5 | NA | NA | NA | |||||||||||||
| GLY | G:22 | G:22 | 87.0 | 1.0 | T | 87.3 | -20.8 | NA | NA | NA | |||||||||||||
| 1hrp | 1 | P01215 | 98.91 | 3e-65 |
X-RAY |
1994-11-01 | GLY | A:22 | A:22 | 89.0 | 1.0 | T | 71.4 | 27.6 | 89.0 | 1.0 | 0.0 |
NAG NAG |
5.574 6.628 |
O CA |
O3 O6 |
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| 1qfw | 1 | P01215 | 98.91 | 3e-65 |
X-RAY |
2000-04-26 | GLY | A:22 | A:22 | 87.0 | 1.0 | T | 85.3 | -10.0 | 82.0 | 1.0 | 0.0 |
D:None:0.067 |
NAG |
5.013 |
O |
O3 |
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| 4ay9 | 1 | Q96QJ4 | 98.91 | 3e-65 |
X-RAY |
2012-08-08 | GLY | A:22 | A:22 | 88.0 | 1.0 | T | 81.5 | -16.0 | NA | NA | NA | ||||||
| GLY | C:22 | D:22 | 89.0 | 1.0 | T | 81.1 | -18.5 | 89.0 | 1.0 | 0.0 |
NAG HOH |
4.170 9.924 |
O O |
O3 O |
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| GLY | E:22 | G:22 | 90.0 | 1.0 | T | 80.2 | -12.3 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p01215-f1 | 1 | P01215 | 100.0 | 3e-85 | GLY | A:46 | A:46 | 86.0 | 1.0 | T | 82.8 | -5.0 | |