Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 106696099 . C A CCDS5055.1:NM_004849.2:c.499Gcc>Tcc_NP_004840.1:p.167A>S Homo sapiens autophagy related 5 (ATG5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5npv 1 Q9H1Y0 100.0 0.0 X-RAY
 2017-10-11 ALA A:174 A:167 70.0 0.609 H -54.7 -43.6 70.0 0.609 0.0
ALA C:174 C:167 36.0 0.313 H -48.1 -40.1 NA NA NA
5npw 1 Q9H1Y0 100.0 0.0 X-RAY
 2017-10-11 ALA A:174 A:167 28.0 0.243 H -58.4 -46.8 28.0 0.243 0.0
ALA C:174 C:167 36.0 0.313 H -58.2 -47.0 NA NA NA
ALA E:174 E:167 50.0 0.435 H -58.3 -47.1 NA NA NA
ALA G:174 G:167 22.0 0.191 H -58.5 -47.0 NA NA NA
4tq0 1 Q9H1Y0 100.0 0.0 X-RAY
 2015-03-11 ALA A:181 A:167 47.0 0.409 H -57.3 -42.5 47.0 0.409 0.0 HOH
 3.758
 N
 O
ALA C:181 C:167 59.0 0.513 H -55.7 -46.3 NA NA NA
ALA E:181 E:167 43.0 0.374 H -64.1 -40.9 NA NA NA
4tq1 1 Q9H1Y0 100.0 0.0 X-RAY
 2015-03-11 ALA A:181 A:167 45.0 0.391 H -58.9 -30.3 45.0 0.391 0.0 HOH
 2.666
 O
 O
4gdk 2 Q9H1Y0 100.0 0.0 X-RAY
 2012-12-05 ALA B:167 B:167 40.0 0.348 H -59.4 -32.1 40.0 0.348 0.0 HOH
 9.909
 N
 O
ALA E:167 E:167 43.0 0.374 H -66.9 -20.5 43.0 0.374 0.0
4gdl 2 Q9H1Y0 100.0 0.0 X-RAY
 2012-12-05 ALA B:167 B:167 39.0 0.339 H -67.3 -24.2 39.0 0.339 0.0
4naw 2 Q9H1Y0 100.0 0.0 X-RAY
 2013-11-06 ALA B:167 B:167 41.0 0.357 H -58.9 -30.9 41.0 0.357 0.0 SO4
HOH
 7.088
3.306
 H
HB1
 O4
O
ALA F:167 F:167 41.0 0.357 H -60.4 -27.6 NA NA NA
ALA J:167 J:167 38.0 0.33 H -60.8 -26.9 NA NA NA
ALA N:167 N:167 27.0 0.235 H -64.7 -31.9 NA NA NA
5d7g 1 Q9H1Y0 99.64 0.0 X-RAY
 2016-02-03 ALA A:172 A:167 57.0 0.496 H -62.7 -32.4 57.0 0.496 0.0
ALA C:172 C:167 41.0 0.357 H -64.5 -39.2 41.0 0.357 0.0
ALA E:172 E:167 66.0 0.574 H -66.0 -34.4 NA NA NA
ALA G:172 G:167 47.0 0.409 H -67.8 -28.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h1y0-f1 1 Q9H1Y0 100.0 0.0 ALA A:167 A:167 28.0 0.243 H -57.4 -28.7