Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 106727593 . C A CCDS5055.1:NM_004849.2:c.421Gta>Tta_NP_004840.1:p.141V>L Homo sapiens autophagy related 5 (ATG5), mRNA.
pdb_id: 
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label_comp_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5npv 1 Q9H1Y0 100.0 0.0 X-RAY
 2017-10-11 VAL A:148 A:141 30.0 0.194 S -125.6 -47.9 30.0 0.194 0.0
VAL C:148 C:141 22.0 0.142 H -65.6 -40.2 NA NA NA
5npw 1 Q9H1Y0 100.0 0.0 X-RAY
 2017-10-11 VAL A:148 A:141 28.0 0.181 H -78.9 -39.9 28.0 0.181 0.0
VAL C:148 C:141 18.0 0.116 H -79.0 -42.1 NA NA NA
VAL E:148 E:141 31.0 0.2 H -80.0 -40.7 NA NA NA
VAL G:148 G:141 14.0 0.09 H -79.3 -38.9 NA NA NA
4tq0 1 Q9H1Y0 100.0 0.0 X-RAY
 2015-03-11 VAL A:155 A:141 30.0 0.194 H -72.7 -40.2 30.0 0.194 0.0 HOH
 5.355
 N
 O
VAL C:155 C:141 42.0 0.271 H -70.8 -41.4 NA NA NA
VAL E:155 E:141 40.0 0.258 T -80.1 -38.4 NA NA NA
4tq1 1 Q9H1Y0 100.0 0.0 X-RAY
 2015-03-11 VAL A:155 A:141 33.0 0.213 H -74.9 -49.6 33.0 0.213 0.0 HOH
 2.855
 O
 O
4gdk 2 Q9H1Y0 100.0 0.0 X-RAY
 2012-12-05 VAL B:141 B:141 36.0 0.232 T -78.5 -44.2 36.0 0.232 0.0
VAL E:141 E:141 36.0 0.232 H -72.5 -45.6 36.0 0.232 0.0
4gdl 2 Q9H1Y0 100.0 0.0 X-RAY
 2012-12-05 VAL B:141 B:141 35.0 0.226 T -91.5 -47.2 35.0 0.226 0.0
4naw 2 Q9H1Y0 100.0 0.0 X-RAY
 2013-11-06 VAL B:141 B:141 32.0 0.206 H -72.3 -49.1 32.0 0.206 0.0 HOH
 7.494
 H
 O
VAL F:141 F:141 38.0 0.245 H -79.1 -48.4 NA NA NA
VAL J:141 J:141 26.0 0.168 H -75.3 -53.8 NA NA NA
VAL N:141 N:141 31.0 0.2 H -61.1 -60.8 NA NA NA
5d7g 1 Q9H1Y0 99.64 0.0 X-RAY
 2016-02-03 VAL A:146 A:141 36.0 0.232 H -84.5 -40.6 36.0 0.232 0.0
VAL C:146 C:141 34.0 0.219 T -84.4 -41.2 34.0 0.219 0.0
VAL E:146 E:141 25.0 0.161 H -82.3 -40.9 NA NA NA
VAL G:146 G:141 36.0 0.232 T -101.6 -24.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h1y0-f1 1 Q9H1Y0 100.0 0.0 VAL A:141 A:141 32.0 0.206 H -64.3 -47.1