Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 106727629 . T A CCDS5055.1:NM_004849.2:c.385Atg>Ttg_NP_004840.1:p.129M>L Homo sapiens autophagy related 5 (ATG5), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5npv 1 Q9H1Y0 100.0 0.0 X-RAY
 2017-10-11 MET A:136 A:129 2.0 0.011 H -77.0 -54.1 2.0 0.011 0.0 HOH
 8.541
 H
 O
MET C:136 C:129 1.0 0.005 H -76.0 -40.8 NA NA NA
5npw 1 Q9H1Y0 100.0 0.0 X-RAY
 2017-10-11 MET A:136 A:129 1.0 0.005 H -67.2 -48.1 1.0 0.005 0.0
MET C:136 C:129 2.0 0.011 H -67.1 -48.8 NA NA NA
MET E:136 E:129 1.0 0.005 H -65.9 -49.6 NA NA NA
MET G:136 G:129 1.0 0.005 H -67.3 -49.8 NA NA NA
4tq0 1 Q9H1Y0 100.0 0.0 X-RAY
 2015-03-11 MET A:143 A:129 2.0 0.011 H -60.4 -40.9 2.0 0.011 0.0 HOH
 6.567
 N
 O
MET C:143 C:129 1.0 0.005 H -56.3 -42.0 NA NA NA
MET E:143 E:129 3.0 0.016 H -61.8 -37.5 NA NA NA
4tq1 1 Q9H1Y0 100.0 0.0 X-RAY
 2015-03-11 MET A:143 A:129 0.0 0.0 H -59.7 -39.4 0.0 0.0 0.0 HOH
 5.660
 O
 O
4gdk 2 Q9H1Y0 100.0 0.0 X-RAY
 2012-12-05 MET B:129 B:129 1.0 0.005 H -60.7 -45.0 1.0 0.005 0.0 HOH
 7.678
 CG
 O
MET E:129 E:129 2.0 0.011 H -64.5 -48.5 2.0 0.011 0.0 HOH
 7.228
 N
 O
4gdl 2 Q9H1Y0 100.0 0.0 X-RAY
 2012-12-05 MET B:129 B:129 2.0 0.011 H -65.0 -40.9 2.0 0.011 0.0
4naw 2 Q9H1Y0 100.0 0.0 X-RAY
 2013-11-06 MET B:129 B:129 1.0 0.005 H -61.5 -39.8 1.0 0.005 0.0 HOH
 5.507
 O
 O
MET F:129 F:129 0.0 0.0 H -63.4 -39.5 NA NA NA
MET J:129 J:129 1.0 0.005 H -62.3 -41.4 NA NA NA
MET N:129 N:129 1.0 0.005 H -70.6 -39.1 NA NA NA
5d7g 1 Q9H1Y0 99.64 0.0 X-RAY
 2016-02-03 MET A:134 A:129 10.0 0.054 H -65.2 -46.7 10.0 0.054 0.0
MET C:134 C:129 2.0 0.011 H -63.7 -42.5 2.0 0.011 0.0
MET E:134 E:129 3.0 0.016 H -76.4 -39.2 NA NA NA
MET G:134 G:129 2.0 0.011 H -67.7 -39.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h1y0-f1 1 Q9H1Y0 100.0 0.0 MET A:129 A:129 0.0 0.0 H -58.1 -42.6