Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 106727648 . T A CCDS5055.1:NM_004849.2:c.366gaA>gaT_NP_004840.1:p.122E>D Homo sapiens autophagy related 5 (ATG5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5npv 1 Q9H1Y0 100.0 0.0 X-RAY
 2017-10-11 GLU A:129 A:122 22.0 0.116 H -50.1 -46.0 22.0 0.116 0.0
GLU C:129 C:122 47.0 0.247 H -55.1 -36.8 NA NA NA
5npw 1 Q9H1Y0 100.0 0.0 X-RAY
 2017-10-11 GLU A:129 A:122 47.0 0.247 H -59.8 -37.5 47.0 0.247 0.0
GLU C:129 C:122 54.0 0.284 H -58.4 -37.8 NA NA NA
GLU E:129 E:122 26.0 0.137 H -58.8 -37.3 NA NA NA
GLU G:129 G:122 22.0 0.116 H -59.6 -37.6 NA NA NA
4tq0 1 Q9H1Y0 100.0 0.0 X-RAY
 2015-03-11 GLU A:136 A:122 55.0 0.289 H -54.7 -31.6 55.0 0.289 0.0 HOH
 2.834
 OE2
 O
GLU C:136 C:122 27.0 0.142 H -62.5 -39.3 NA NA NA
GLU E:136 E:122 26.0 0.137 H -56.8 -37.1 NA NA NA
4tq1 1 Q9H1Y0 100.0 0.0 X-RAY
 2015-03-11 GLU A:136 A:122 29.0 0.153 H -59.2 -44.5 29.0 0.153 0.0 HOH
 2.579
 OE2
 O
4gdk 2 Q9H1Y0 100.0 0.0 X-RAY
 2012-12-05 GLU B:122 B:122 21.0 0.111 H -63.1 -33.3 21.0 0.111 0.0 HOH
 7.273
 O
 O
GLU E:122 E:122 23.0 0.121 H -59.9 -45.2 23.0 0.121 0.0 HOH
 9.233
 O
 O
4gdl 2 Q9H1Y0 100.0 0.0 X-RAY
 2012-12-05 GLU B:122 B:122 24.0 0.126 H -58.4 -36.0 24.0 0.126 0.0
4naw 2 Q9H1Y0 100.0 0.0 X-RAY
 2013-11-06 GLU B:122 B:122 57.0 0.3 H -64.1 -44.3 57.0 0.3 0.0 HOH
 2.631
 OE2
 O
GLU F:122 F:122 27.0 0.142 H -61.1 -44.3 NA NA NA
GLU J:122 J:122 29.0 0.153 H -62.9 -44.5 NA NA NA
GLU N:122 N:122 25.0 0.132 H -58.6 -46.2 NA NA NA
5d7g 1 Q9H1Y0 99.64 0.0 X-RAY
 2016-02-03 ASP A:127 A:122 46.0 0.307 H -49.3 -42.7 46.0 0.307 0.0
ASP C:127 C:122 45.0 0.3 H -49.2 -37.6 45.0 0.3 0.0
ASP E:127 E:122 38.0 0.253 H -52.8 -45.1 NA NA NA
ASP G:127 G:122 45.0 0.3 H -64.7 -49.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h1y0-f1 1 Q9H1Y0 100.0 0.0 GLU A:122 A:122 56.0 0.295 H -57.9 -45.3