Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 149721678 . C A CCDS34549.1:NM_001002255.1:c.151Cgg>Agg_NP_001002255.1:p.51R>R Homo sapiens small ubiquitin-like modifier 4 (SUMO4), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2n9e 2 P61956 85.26 7e-56 NMR
 2016-01-20 GLN B:51 B:51 70.0 0.389 H -73.3 -19.2 70.0 0.389 0.0
6jxw 1 P61956 85.26 7e-56 NMR
 2020-02-05 GLN A:51 A:51 109.0 0.606 H -76.8 -36.1 109.0 0.606 0.0
6jxx 1 P61956 85.26 7e-56 NMR
 2020-02-05 GLN A:51 A:51 94.0 0.522 H -80.2 -15.0 78.0 0.433 0.089 B:None:0.089
2d07 2 P61956 84.95 5e-54 X-RAY
 2006-06-06 GLN B:51 B:51 51.0 0.283 H -88.9 -8.0 12.0 0.067 0.216 A:Q13569:0.217
 HOH
 3.781
 NE2
 O
2rpq 1 P61956 84.95 5e-54 NMR
 2008-10-07 GLN A:51 A:51 96.0 0.533 H -114.2 9.6 96.0 0.533 0.0
2n1w 1 P61956 84.95 1e-53 NMR
 2016-04-20 GLN A:65 A:51 63.0 0.35 H -90.8 -18.7 63.0 0.35 0.0
5ghb 1 P61956 84.95 1e-53 NMR
 2017-06-07 GLN A:65 A:51 63.0 0.35 H -73.9 -22.1 63.0 0.35 0.0
5ghc 1 P61956 84.95 1e-53 NMR
 2017-06-07 GLN A:65 A:51 56.0 0.311 H -82.7 -21.6 56.0 0.311 0.0
5tvq 2 P61957 86.9 5e-50 X-RAY
 2017-09-27 GLN B:44 B:51 57.0 0.317 H -84.1 -7.5 54.0 0.3 0.017 A:Q9JJX7:0.017
 HOH
 4.703
 NE2
 O
4npn 1 P61956 85.54 1e-48 X-RAY
 2014-10-15 GLN A:59 A:51 82.0 0.456 H -91.8 -2.6 52.0 0.289 0.167 A:P61956:0.167
 HOH
 5.331
 CD
 O
3zo5 2 P61956 86.42 2e-48 X-RAY
 2014-01-29 GLN B:39 B:51 56.0 0.311 H -86.5 -2.4 56.0 0.311 0.0 HOH
 9.092
 NE2
 O
2io0 2 P61956 86.42 4e-48 X-RAY
 2006-11-14 GLN B:39 B:51 59.0 0.328 T -91.5 -2.8 59.0 0.328 0.0 HOH
 4.492
 NE2
 O
2iyd 2 P61956 86.42 6e-48 X-RAY
 2006-08-08 GLN B:37 B:50 60.0 0.333 T 56.8 59.3 60.0 0.333 0.0
2mp2 2 P55854 82.22 6e-48 NMR
 2014-07-02 GLN B:50 B:50 71.0 0.394 H -102.6 -18.7 71.0 0.394 0.0
4bkg 1 P61956 86.59 2e-47 X-RAY
 2013-11-06 GLN A:42 A:51 80.0 0.444 H -102.4 1.5 80.0 0.444 0.0 HOH
 2.836
 OE1
 O
4bkg 1 P61956 86.59 2e-47 X-RAY
 2013-11-06 GLN A:126 NA:NA DO NA DO DO DO NA NA NA
5tvp 3 P61957 87.34 3e-47 X-RAY
 2017-10-11 GLN E:44 Q:51 60.0 0.333 H -96.4 -10.4 NA NA NA
3uin 2 P61956 86.25 5e-47 X-RAY
 2011-12-28 GLN B:38 B:51 58.0 0.322 H -93.4 -7.5 52.0 0.289 0.033 D:P49792:0.033
 HOH
 7.581
 O
 O
3uio 2 P61956 86.25 5e-47 X-RAY
 2011-12-28 GLN B:38 B:51 53.0 0.294 H -87.4 -14.1 51.0 0.283 0.011 D:P49792:0.011
 HOH
 2.651
 NE2
 O
2io1 2 P55854 86.25 1e-46 X-RAY
 2006-11-14 GLN B:41 B:50 67.0 0.372 H -82.1 -2.9 67.0 0.372 0.0 HOH
 3.346
 NE2
 O
GLN D:41 D:50 66.0 0.367 H -88.1 -7.4 NA NA NA
GLN F:41 F:50 70.0 0.389 T -147.9 -1.5 NA NA NA
1wm2 1 P61956 87.18 2e-46 X-RAY
 2004-11-30 GLN A:40 A:51 87.0 0.483 H -94.9 4.5 9.0 0.05 0.433 A:P61956:0.367
A:P61956:0.089
 HOH
 2.728
 O
 O
2io3 2 P61956 86.08 3e-46 X-RAY
 2006-11-14 GLN B:39 B:51 106.0 0.589 T -150.8 -13.7 98.0 0.544 0.045 A:Q9HC62:0.044
5d2m 2 P61956 86.08 4e-46 X-RAY
 2015-11-04 GLN B:41 B:51 53.0 0.294 H -88.9 9.3 43.0 0.239 0.055 G:Q9Y4E5:0.056
 HOH
 4.068
 HE21
 O
GLN E:41 E:51 54.0 0.3 H -87.5 -2.4 54.0 0.3 0.0 HOH
 2.143
 HE22
 O
2ckh 2 P61956 86.08 4e-46 X-RAY
 2006-04-26 GLN B:37 B:50 60.0 0.333 T 55.6 63.6 60.0 0.333 0.0
2mp2 1 P55854 86.08 4e-46 NMR
 2014-07-02 GLN A:40 A:40 84.0 0.467 S -118.2 -106.6 71.0 0.394 0.073 C:Q9QZS2:0.072
6nnq 2 P55854 85.9 3e-45 X-RAY
 2019-05-08 GLN B:36 B:51 77.0 0.428 H -63.4 -8.7 77.0 0.428 0.0
5elu 2 P61956 86.84 6e-45 X-RAY
 2016-11-16 GLN B:39 B:51 68.0 0.378 H -83.8 -11.6 48.0 0.267 0.111 A:None:0.111
 HOH
 2.496
 OE1
 O
5eql 2 P61956 86.84 6e-45 X-RAY
 2016-11-23 GLN B:39 B:51 58.0 0.322 H -105.4 5.8 58.0 0.322 0.0 HOH
 4.056
 OE1
 O
6k5r 1 P55854 85.71 2e-44 NMR
 2019-08-07 GLN A:36 A:51 97.0 0.539 H -81.5 -30.6 97.0 0.539 0.0
1wm3 1 P61956 87.5 3e-42 X-RAY
 2004-11-30 GLN A:35 A:51 85.0 0.472 H -99.6 -0.6 54.0 0.3 0.172 A:P61956:0.172
 HOH
 2.693
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q6eev6-f1 1 Q6EEV6 98.95 1e-67 ARG A:51 A:51 85.0 0.378 G -96.2 -4.2
af-p61956-f1 1 P61956 85.26 3e-56 GLN A:51 A:51 67.0 0.372 H -90.2 -7.0
af-p55854-f1 1 P55854 82.98 1e-51 GLN A:50 A:50 69.0 0.383 H -87.2 -8.2