Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr6 | 149721679 | . | G | A | CCDS34549.1:NM_001002255.1:c.152cGg>cAg_NP_001002255.1:p.51R>Q | Homo sapiens small ubiquitin-like modifier 4 (SUMO4), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2n9e | 2 | P61956 | 85.26 | 7e-56 |
NMR |
2016-01-20 | GLN | B:51 | B:51 | 70.0 | 0.389 | H | -73.3 | -19.2 | 70.0 | 0.389 | 0.0 | ||||||
6jxw | 1 | P61956 | 85.26 | 7e-56 |
NMR |
2020-02-05 | GLN | A:51 | A:51 | 109.0 | 0.606 | H | -76.8 | -36.1 | 109.0 | 0.606 | 0.0 | ||||||
6jxx | 1 | P61956 | 85.26 | 7e-56 |
NMR |
2020-02-05 | GLN | A:51 | A:51 | 94.0 | 0.522 | H | -80.2 | -15.0 | 78.0 | 0.433 | 0.089 |
B:None:0.089 |
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2d07 | 2 | P61956 | 84.95 | 5e-54 |
X-RAY |
2006-06-06 | GLN | B:51 | B:51 | 51.0 | 0.283 | H | -88.9 | -8.0 | 12.0 | 0.067 | 0.216 |
A:Q13569:0.217 |
HOH |
3.781 |
NE2 |
O |
|
2rpq | 1 | P61956 | 84.95 | 5e-54 |
NMR |
2008-10-07 | GLN | A:51 | A:51 | 96.0 | 0.533 | H | -114.2 | 9.6 | 96.0 | 0.533 | 0.0 | ||||||
2n1w | 1 | P61956 | 84.95 | 1e-53 |
NMR |
2016-04-20 | GLN | A:65 | A:51 | 63.0 | 0.35 | H | -90.8 | -18.7 | 63.0 | 0.35 | 0.0 | ||||||
5ghb | 1 | P61956 | 84.95 | 1e-53 |
NMR |
2017-06-07 | GLN | A:65 | A:51 | 63.0 | 0.35 | H | -73.9 | -22.1 | 63.0 | 0.35 | 0.0 | ||||||
5ghc | 1 | P61956 | 84.95 | 1e-53 |
NMR |
2017-06-07 | GLN | A:65 | A:51 | 56.0 | 0.311 | H | -82.7 | -21.6 | 56.0 | 0.311 | 0.0 | ||||||
5tvq | 2 | P61957 | 86.9 | 5e-50 |
X-RAY |
2017-09-27 | GLN | B:44 | B:51 | 57.0 | 0.317 | H | -84.1 | -7.5 | 54.0 | 0.3 | 0.017 |
A:Q9JJX7:0.017 |
HOH |
4.703 |
NE2 |
O |
|
4npn | 1 | P61956 | 85.54 | 1e-48 |
X-RAY |
2014-10-15 | GLN | A:59 | A:51 | 82.0 | 0.456 | H | -91.8 | -2.6 | 52.0 | 0.289 | 0.167 |
A:P61956:0.167 |
HOH |
5.331 |
CD |
O |
|
3zo5 | 2 | P61956 | 86.42 | 2e-48 |
X-RAY |
2014-01-29 | GLN | B:39 | B:51 | 56.0 | 0.311 | H | -86.5 | -2.4 | 56.0 | 0.311 | 0.0 |
HOH |
9.092 |
NE2 |
O |
||
2io0 | 2 | P61956 | 86.42 | 4e-48 |
X-RAY |
2006-11-14 | GLN | B:39 | B:51 | 59.0 | 0.328 | T | -91.5 | -2.8 | 59.0 | 0.328 | 0.0 |
HOH |
4.492 |
NE2 |
O |
||
2iyd | 2 | P61956 | 86.42 | 6e-48 |
X-RAY |
2006-08-08 | GLN | B:37 | B:50 | 60.0 | 0.333 | T | 56.8 | 59.3 | 60.0 | 0.333 | 0.0 | ||||||
2mp2 | 2 | P55854 | 82.22 | 6e-48 |
NMR |
2014-07-02 | GLN | B:50 | B:50 | 71.0 | 0.394 | H | -102.6 | -18.7 | 71.0 | 0.394 | 0.0 | ||||||
4bkg | 1 | P61956 | 86.59 | 2e-47 |
X-RAY |
2013-11-06 | GLN | A:42 | A:51 | 80.0 | 0.444 | H | -102.4 | 1.5 | 80.0 | 0.444 | 0.0 |
HOH |
2.836 |
OE1 |
O |
||
4bkg | 1 | P61956 | 86.59 | 2e-47 |
X-RAY |
2013-11-06 | GLN | A:126 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
5tvp | 3 | P61957 | 87.34 | 3e-47 |
X-RAY |
2017-10-11 | GLN | E:44 | Q:51 | 60.0 | 0.333 | H | -96.4 | -10.4 | NA | NA | NA | ||||||
3uin | 2 | P61956 | 86.25 | 5e-47 |
X-RAY |
2011-12-28 | GLN | B:38 | B:51 | 58.0 | 0.322 | H | -93.4 | -7.5 | 52.0 | 0.289 | 0.033 |
D:P49792:0.033 |
HOH |
7.581 |
O |
O |
|
3uio | 2 | P61956 | 86.25 | 5e-47 |
X-RAY |
2011-12-28 | GLN | B:38 | B:51 | 53.0 | 0.294 | H | -87.4 | -14.1 | 51.0 | 0.283 | 0.011 |
D:P49792:0.011 |
HOH |
2.651 |
NE2 |
O |
|
2io1 | 2 | P55854 | 86.25 | 1e-46 |
X-RAY |
2006-11-14 | GLN | B:41 | B:50 | 67.0 | 0.372 | H | -82.1 | -2.9 | 67.0 | 0.372 | 0.0 |
HOH |
3.346 |
NE2 |
O |
||
GLN | D:41 | D:50 | 66.0 | 0.367 | H | -88.1 | -7.4 | NA | NA | NA | |||||||||||||
GLN | F:41 | F:50 | 70.0 | 0.389 | T | -147.9 | -1.5 | NA | NA | NA | |||||||||||||
1wm2 | 1 | P61956 | 87.18 | 2e-46 |
X-RAY |
2004-11-30 | GLN | A:40 | A:51 | 87.0 | 0.483 | H | -94.9 | 4.5 | 9.0 | 0.05 | 0.433 |
A:P61956:0.367 A:P61956:0.089 |
HOH |
2.728 |
O |
O |
|
2io3 | 2 | P61956 | 86.08 | 3e-46 |
X-RAY |
2006-11-14 | GLN | B:39 | B:51 | 106.0 | 0.589 | T | -150.8 | -13.7 | 98.0 | 0.544 | 0.045 |
A:Q9HC62:0.044 |
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5d2m | 2 | P61956 | 86.08 | 4e-46 |
X-RAY |
2015-11-04 | GLN | B:41 | B:51 | 53.0 | 0.294 | H | -88.9 | 9.3 | 43.0 | 0.239 | 0.055 |
G:Q9Y4E5:0.056 |
HOH |
4.068 |
HE21 |
O |
|
GLN | E:41 | E:51 | 54.0 | 0.3 | H | -87.5 | -2.4 | 54.0 | 0.3 | 0.0 |
HOH |
2.143 |
HE22 |
O |
|||||||||
2ckh | 2 | P61956 | 86.08 | 4e-46 |
X-RAY |
2006-04-26 | GLN | B:37 | B:50 | 60.0 | 0.333 | T | 55.6 | 63.6 | 60.0 | 0.333 | 0.0 | ||||||
2mp2 | 1 | P55854 | 86.08 | 4e-46 |
NMR |
2014-07-02 | GLN | A:40 | A:40 | 84.0 | 0.467 | S | -118.2 | -106.6 | 71.0 | 0.394 | 0.073 |
C:Q9QZS2:0.072 |
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6nnq | 2 | P55854 | 85.9 | 3e-45 |
X-RAY |
2019-05-08 | GLN | B:36 | B:51 | 77.0 | 0.428 | H | -63.4 | -8.7 | 77.0 | 0.428 | 0.0 | ||||||
5elu | 2 | P61956 | 86.84 | 6e-45 |
X-RAY |
2016-11-16 | GLN | B:39 | B:51 | 68.0 | 0.378 | H | -83.8 | -11.6 | 48.0 | 0.267 | 0.111 |
A:None:0.111 |
HOH |
2.496 |
OE1 |
O |
|
5eql | 2 | P61956 | 86.84 | 6e-45 |
X-RAY |
2016-11-23 | GLN | B:39 | B:51 | 58.0 | 0.322 | H | -105.4 | 5.8 | 58.0 | 0.322 | 0.0 |
HOH |
4.056 |
OE1 |
O |
||
6k5r | 1 | P55854 | 85.71 | 2e-44 |
NMR |
2019-08-07 | GLN | A:36 | A:51 | 97.0 | 0.539 | H | -81.5 | -30.6 | 97.0 | 0.539 | 0.0 | ||||||
1wm3 | 1 | P61956 | 87.5 | 3e-42 |
X-RAY |
2004-11-30 | GLN | A:35 | A:51 | 85.0 | 0.472 | H | -99.6 | -0.6 | 54.0 | 0.3 | 0.172 |
A:P61956:0.172 |
HOH |
2.693 |
O |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q6eev6-f1 | 1 | Q6EEV6 | 98.95 | 1e-67 | ARG | A:51 | A:51 | 85.0 | 0.378 | G | -96.2 | -4.2 | |
af-p61956-f1 | 1 | P61956 | 85.26 | 3e-56 | GLN | A:51 | A:51 | 67.0 | 0.372 | H | -90.2 | -7.0 | |
af-p55854-f1 | 1 | P55854 | 82.98 | 1e-51 | GLN | A:50 | A:50 | 69.0 | 0.383 | H | -87.2 | -8.2 |