Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr6 | 149721690 | . | G | A | CCDS34549.1:NM_001002255.1:c.163Gtg>Atg_NP_001002255.1:p.55V>M | Homo sapiens small ubiquitin-like modifier 4 (SUMO4), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 2n9e | 2 | P61956 | 85.26 | 7e-56 |
NMR |
2016-01-20 | MET | B:55 | B:55 | 66.0 | 0.357 | G | -49.5 | -21.8 | 66.0 | 0.357 | 0.0 | ||||||
| 6jxw | 1 | P61956 | 85.26 | 7e-56 |
NMR |
2020-02-05 | MET | A:55 | A:55 | 63.0 | 0.341 | T | -62.8 | -17.5 | 63.0 | 0.341 | 0.0 | ||||||
| 6jxx | 1 | P61956 | 85.26 | 7e-56 |
NMR |
2020-02-05 | MET | A:55 | A:55 | 67.0 | 0.362 | T | -66.7 | -27.0 | 67.0 | 0.362 | 0.0 | ||||||
| 2d07 | 2 | P61956 | 84.95 | 5e-54 |
X-RAY |
2006-06-06 | MET | B:55 | B:55 | 73.0 | 0.395 | G | -66.9 | -20.8 | 73.0 | 0.395 | 0.0 |
HOH |
6.550 |
O |
O |
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| 2rpq | 1 | P61956 | 84.95 | 5e-54 |
NMR |
2008-10-07 | MET | A:55 | A:55 | 98.0 | 0.53 | T | -63.7 | -32.6 | 98.0 | 0.53 | 0.0 | ||||||
| 2n1w | 1 | P61956 | 84.95 | 1e-53 |
NMR |
2016-04-20 | MET | A:69 | A:55 | 48.0 | 0.259 | T | -60.1 | -25.5 | 48.0 | 0.259 | 0.0 | ||||||
| 5ghb | 1 | P61956 | 84.95 | 1e-53 |
NMR |
2017-06-07 | MET | A:69 | A:55 | 54.0 | 0.292 | G | -63.5 | -26.2 | 54.0 | 0.292 | 0.0 | ||||||
| 5ghc | 1 | P61956 | 84.95 | 1e-53 |
NMR |
2017-06-07 | MET | A:69 | A:55 | 58.0 | 0.314 | T | -64.4 | -24.0 | 58.0 | 0.314 | 0.0 | ||||||
| 5tvq | 2 | P61957 | 86.9 | 5e-50 |
X-RAY |
2017-09-27 | MET | B:48 | B:55 | 69.0 | 0.373 | T | -52.8 | -40.0 | 69.0 | 0.373 | 0.0 |
HOH |
5.640 |
O |
O |
||
| 4npn | 1 | P61956 | 85.54 | 1e-48 |
X-RAY |
2014-10-15 | MET | A:63 | A:55 | 89.0 | 0.481 | T | -62.5 | -17.3 | 89.0 | 0.481 | 0.0 |
HOH |
8.570 |
CE |
O |
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| 3zo5 | 2 | P61956 | 86.42 | 2e-48 |
X-RAY |
2014-01-29 | MET | B:43 | B:55 | 53.0 | 0.286 | G | -49.1 | -44.5 | 53.0 | 0.286 | 0.0 |
HOH |
6.308 |
O |
O |
||
| 2io0 | 2 | P61956 | 86.42 | 4e-48 |
X-RAY |
2006-11-14 | MET | B:43 | B:55 | 70.0 | 0.378 | S | -64.1 | -37.6 | 70.0 | 0.378 | 0.0 |
HOH |
3.044 |
N |
O |
||
| 2iyd | 2 | P61956 | 86.42 | 6e-48 |
X-RAY |
2006-08-08 | MET | B:41 | B:54 | 47.0 | 0.254 | S | 120.0 | -70.3 | 47.0 | 0.254 | 0.0 | ||||||
| 2mp2 | 2 | P55854 | 82.22 | 6e-48 |
NMR |
2014-07-02 | MET | B:54 | B:54 | 41.0 | 0.222 | S | 84.1 | -45.3 | 41.0 | 0.222 | 0.0 | ||||||
| 4bkg | 1 | P61956 | 86.59 | 2e-47 |
X-RAY |
2013-11-06 | MET | A:46 | A:55 | 87.0 | 0.47 | G | -43.3 | -46.6 | 87.0 | 0.47 | 0.0 |
HOH |
7.627 |
O |
O |
||
| 4bkg | 1 | P61956 | 86.59 | 2e-47 |
X-RAY |
2013-11-06 | MET | A:130 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 5tvp | 3 | P61957 | 87.34 | 3e-47 |
X-RAY |
2017-10-11 | MET | E:48 | Q:55 | 61.0 | 0.33 | T | -55.7 | -30.1 | NA | NA | NA | ||||||
| 3uin | 2 | P61956 | 86.25 | 5e-47 |
X-RAY |
2011-12-28 | MET | B:42 | B:55 | 48.0 | 0.259 | T | -69.8 | -22.3 | 48.0 | 0.259 | 0.0 |
HOH |
5.306 |
N |
O |
||
| 3uio | 2 | P61956 | 86.25 | 5e-47 |
X-RAY |
2011-12-28 | MET | B:42 | B:55 | 51.0 | 0.276 | T | -64.2 | -18.4 | 51.0 | 0.276 | 0.0 | ||||||
| 2io1 | 2 | P55854 | 86.25 | 1e-46 |
X-RAY |
2006-11-14 | MET | B:45 | B:54 | 77.0 | 0.416 | G | -50.2 | -48.0 | 77.0 | 0.416 | 0.0 |
HOH |
3.178 |
N |
O |
||
| MET | D:45 | D:54 | 66.0 | 0.357 | G | -43.1 | -45.7 | NA | NA | NA | |||||||||||||
| MET | F:45 | F:54 | 80.0 | 0.432 | T | -53.7 | -32.8 | NA | NA | NA | |||||||||||||
| 1wm2 | 1 | P61956 | 87.18 | 2e-46 |
X-RAY |
2004-11-30 | MET | A:44 | A:55 | 86.0 | 0.465 | G | -58.7 | -38.3 | 86.0 | 0.465 | 0.0 |
HOH |
2.695 |
O |
O |
||
| 2io3 | 2 | P61956 | 86.08 | 3e-46 |
X-RAY |
2006-11-14 | MET | B:43 | B:55 | 72.0 | 0.389 | T | -67.1 | -26.0 | 43.0 | 0.232 | 0.157 |
C:P46060:0.157 |
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| 5d2m | 2 | P61956 | 86.08 | 4e-46 |
X-RAY |
2015-11-04 | MET | B:45 | B:55 | 51.0 | 0.276 | S | -102.1 | -19.0 | 51.0 | 0.276 | 0.0 |
HOH |
9.437 |
C |
O |
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| MET | E:45 | E:55 | 47.0 | 0.254 | G | -51.7 | -42.5 | 47.0 | 0.254 | 0.0 |
HOH |
2.377 |
H |
O |
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| 2ckh | 2 | P61956 | 86.08 | 4e-46 |
X-RAY |
2006-04-26 | MET | B:41 | B:54 | 52.0 | 0.281 | S | 124.3 | -48.9 | 52.0 | 0.281 | 0.0 | ||||||
| 2mp2 | 1 | P55854 | 86.08 | 4e-46 |
NMR |
2014-07-02 | MET | A:44 | A:44 | 10.0 | 0.054 | S | 80.7 | -15.0 | 10.0 | 0.054 | 0.0 | ||||||
| 6nnq | 2 | P55854 | 85.9 | 3e-45 |
X-RAY |
2019-05-08 | MET | B:40 | B:55 | 40.0 | 0.216 | G | -73.4 | -25.1 | 40.0 | 0.216 | 0.0 |
HOH |
3.701 |
CG |
O |
||
| 5elu | 2 | P61956 | 86.84 | 6e-45 |
X-RAY |
2016-11-16 | MET | B:43 | B:55 | 60.0 | 0.324 | T | -77.9 | -30.0 | 60.0 | 0.324 | 0.0 |
HOH |
3.339 |
N |
O |
||
| 5eql | 2 | P61956 | 86.84 | 6e-45 |
X-RAY |
2016-11-23 | MET | B:43 | B:55 | 60.0 | 0.324 | G | -53.7 | -39.3 | 60.0 | 0.324 | 0.0 | ||||||
| 6k5r | 1 | P55854 | 85.71 | 2e-44 |
NMR |
2019-08-07 | MET | A:40 | A:55 | 53.0 | 0.286 | T | -69.7 | -10.7 | 53.0 | 0.286 | 0.0 | ||||||
| 1wm3 | 1 | P61956 | 87.5 | 3e-42 |
X-RAY |
2004-11-30 | MET | A:39 | A:55 | 84.0 | 0.454 | T | -60.9 | -22.9 | 84.0 | 0.454 | 0.0 |
HOH |
2.623 |
N |
O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q6eev6-f1 | 1 | Q6EEV6 | 98.95 | 1e-67 | MET | A:55 | A:55 | 90.0 | 0.486 | T | -54.9 | -22.6 | |
| af-p61956-f1 | 1 | P61956 | 85.26 | 3e-56 | MET | A:55 | A:55 | 55.0 | 0.297 | T | -57.7 | -23.6 | |
| af-p55854-f1 | 1 | P55854 | 82.98 | 1e-51 | MET | A:54 | A:54 | 54.0 | 0.292 | T | -56.6 | -26.0 | |