Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 149721726 . A C CCDS34549.1:NM_001002255.1:c.199Atc>Ctc_NP_001002255.1:p.67I>L Homo sapiens small ubiquitin-like modifier 4 (SUMO4), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2n9e 2 P61956 85.26 7e-56 NMR
 2016-01-20 ILE B:67 B:67 17.0 0.097 -103.8 132.6 17.0 0.097 0.0
6jxw 1 P61956 85.26 7e-56 NMR
 2020-02-05 ILE A:67 A:67 18.0 0.103 -76.6 138.4 18.0 0.103 0.0
6jxx 1 P61956 85.26 7e-56 NMR
 2020-02-05 ILE A:67 A:67 16.0 0.091 -85.4 129.3 16.0 0.091 0.0
2d07 2 P61956 84.95 5e-54 X-RAY
 2006-06-06 ILE B:67 B:67 15.0 0.086 -96.5 115.2 15.0 0.086 0.0 HOH
 3.650
 O
 O
2rpq 1 P61956 84.95 5e-54 NMR
 2008-10-07 ILE A:67 A:67 11.0 0.063 E -119.3 137.6 11.0 0.063 0.0
2n1w 1 P61956 84.95 1e-53 NMR
 2016-04-20 ILE A:81 A:67 6.0 0.034 -115.8 160.4 6.0 0.034 0.0
5ghb 1 P61956 84.95 1e-53 NMR
 2017-06-07 ILE A:81 A:67 9.0 0.051 -131.1 138.0 9.0 0.051 0.0
5ghc 1 P61956 84.95 1e-53 NMR
 2017-06-07 ILE A:81 A:67 2.0 0.011 -99.0 147.3 2.0 0.011 0.0
5tvq 2 P61957 86.9 5e-50 X-RAY
 2017-09-27 ILE B:60 B:67 21.0 0.12 -117.6 117.7 21.0 0.12 0.0 HOH
 7.207
 CD1
 O
4npn 1 P61956 85.54 1e-48 X-RAY
 2014-10-15 ILE A:75 A:67 16.0 0.091 -98.6 123.0 16.0 0.091 0.0 HOH
 4.461
 CG2
 O
3zo5 2 P61956 86.42 2e-48 X-RAY
 2014-01-29 ILE B:55 B:67 11.0 0.063 -109.5 126.9 11.0 0.063 0.0 HOH
 3.619
 O
 O
2io0 2 P61956 86.42 4e-48 X-RAY
 2006-11-14 ILE B:55 B:67 15.0 0.086 -119.2 121.4 15.0 0.086 0.0 SO4
SO4
HOH
 8.877
6.522
3.407
 C
C
O
 O2
O2
O
2iyd 2 P61956 86.42 6e-48 X-RAY
 2006-08-08 ILE B:53 B:66 13.0 0.074 -126.8 118.3 13.0 0.074 0.0
2mp2 2 P55854 82.22 6e-48 NMR
 2014-07-02 ILE B:66 B:66 0.0 0.0 48.8 25.7 0.0 0.0 0.0
4bkg 1 P61956 86.59 2e-47 X-RAY
 2013-11-06 ILE A:58 A:67 15.0 0.086 -104.8 128.3 15.0 0.086 0.0 HOH
 4.067
 CA
 O
4bkg 1 P61956 86.59 2e-47 X-RAY
 2013-11-06 ILE A:142 NA:NA DO NA DO DO DO NA NA NA
5tvp 3 P61957 87.34 3e-47 X-RAY
 2017-10-11 ILE E:60 Q:67 17.0 0.097 -103.3 129.6 NA NA NA
3uin 2 P61956 86.25 5e-47 X-RAY
 2011-12-28 ILE B:54 B:67 16.0 0.091 -127.0 159.3 16.0 0.091 0.0
3uio 2 P61956 86.25 5e-47 X-RAY
 2011-12-28 ILE B:54 B:67 17.0 0.097 -98.3 132.4 17.0 0.097 0.0
2io1 2 P55854 86.25 1e-46 X-RAY
 2006-11-14 ILE B:57 B:66 18.0 0.103 -113.8 134.4 18.0 0.103 0.0 HOH
 4.154
 O
 O
ILE D:57 D:66 15.0 0.086 -112.8 127.4 NA NA NA
ILE F:57 F:66 20.0 0.114 -111.3 142.2 NA NA NA
1wm2 1 P61956 87.18 2e-46 X-RAY
 2004-11-30 ILE A:56 A:67 15.0 0.086 -95.6 126.0 15.0 0.086 0.0 HOH
 6.892
 O
 O
2io3 2 P61956 86.08 3e-46 X-RAY
 2006-11-14 ILE B:55 B:67 16.0 0.091 -78.9 157.9 16.0 0.091 0.0
5d2m 2 P61956 86.08 4e-46 X-RAY
 2015-11-04 ILE B:57 B:67 21.0 0.12 -90.2 135.6 21.0 0.12 0.0 HOH
 9.011
 HD11
 O
ILE E:57 E:67 16.0 0.091 -95.1 124.7 16.0 0.091 0.0 HOH
 2.825
 O
 O
2ckh 2 P61956 86.08 4e-46 X-RAY
 2006-04-26 ILE B:53 B:66 13.0 0.074 -83.4 130.0 13.0 0.074 0.0
2mp2 1 P55854 86.08 4e-46 NMR
 2014-07-02 ILE A:56 A:56 0.0 0.0 -116.6 155.8 0.0 0.0 0.0
6nnq 2 P55854 85.9 3e-45 X-RAY
 2019-05-08 ILE B:52 B:67 3.0 0.017 -86.5 108.4 3.0 0.017 0.0 HOH
 5.204
 O
 O
5elu 2 P61956 86.84 6e-45 X-RAY
 2016-11-16 ILE B:55 B:67 19.0 0.109 -114.1 120.1 19.0 0.109 0.0 SO4
HOH
 8.981
7.218
 N
CD1
 O2
O
5eql 2 P61956 86.84 6e-45 X-RAY
 2016-11-23 ILE B:55 B:67 20.0 0.114 -109.9 131.5 20.0 0.114 0.0 HOH
 7.049
 CD1
 O
6k5r 1 P55854 85.71 2e-44 NMR
 2019-08-07 ILE A:52 A:67 23.0 0.131 -95.9 142.8 23.0 0.131 0.0
1wm3 1 P61956 87.5 3e-42 X-RAY
 2004-11-30 ILE A:51 A:67 16.0 0.091 -98.7 123.9 16.0 0.091 0.0 HOH
 3.421
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q6eev6-f1 1 Q6EEV6 98.95 1e-67 ILE A:67 A:67 17.0 0.097 -105.6 135.3
af-p61956-f1 1 P61956 85.26 3e-56 ILE A:67 A:67 16.0 0.091 -95.9 133.5
af-p55854-f1 1 P55854 82.98 1e-51 ILE A:66 A:66 15.0 0.086 -94.4 131.1