Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr6 | 149721778 | . | T | A | CCDS34549.1:NM_001002255.1:c.251aTt>aAt_NP_001002255.1:p.84I>N | Homo sapiens small ubiquitin-like modifier 4 (SUMO4), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 2n9e | 2 | P61956 | 85.26 | 7e-56 |
NMR |
2016-01-20 | ILE | B:84 | B:84 | 0.0 | 0.0 | E | -85.2 | 131.7 | 0.0 | 0.0 | 0.0 | ||||||
| 6jxw | 1 | P61956 | 85.26 | 7e-56 |
NMR |
2020-02-05 | ILE | A:84 | A:84 | 0.0 | 0.0 | E | -124.4 | 131.0 | 0.0 | 0.0 | 0.0 | ||||||
| 6jxx | 1 | P61956 | 85.26 | 7e-56 |
NMR |
2020-02-05 | ILE | A:84 | A:84 | 1.0 | 0.006 | E | -127.3 | 132.2 | 1.0 | 0.006 | 0.0 | ||||||
| 2d07 | 2 | P61956 | 84.95 | 5e-54 |
X-RAY |
2006-06-06 | ILE | B:84 | B:84 | 1.0 | 0.006 | E | -101.6 | 137.2 | 1.0 | 0.006 | 0.0 |
HOH |
4.365 |
CA |
O |
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| 2rpq | 1 | P61956 | 84.95 | 5e-54 |
NMR |
2008-10-07 | ILE | A:84 | A:84 | 1.0 | 0.006 | E | -119.2 | 140.6 | 1.0 | 0.006 | 0.0 | ||||||
| 2n1w | 1 | P61956 | 84.95 | 1e-53 |
NMR |
2016-04-20 | ILE | A:98 | A:84 | 0.0 | 0.0 | E | -104.8 | 133.1 | 0.0 | 0.0 | 0.0 | ||||||
| 5ghb | 1 | P61956 | 84.95 | 1e-53 |
NMR |
2017-06-07 | ILE | A:98 | A:84 | 2.0 | 0.011 | E | -121.0 | 139.0 | 2.0 | 0.011 | 0.0 | ||||||
| 5ghc | 1 | P61956 | 84.95 | 1e-53 |
NMR |
2017-06-07 | ILE | A:98 | A:84 | 4.0 | 0.023 | E | -99.2 | 139.3 | 4.0 | 0.023 | 0.0 | ||||||
| 5tvq | 2 | P61957 | 86.9 | 5e-50 |
X-RAY |
2017-09-27 | ILE | B:77 | B:84 | 3.0 | 0.017 | E | -90.8 | 133.9 | 3.0 | 0.017 | 0.0 |
HOH |
4.339 |
CA |
O |
||
| 4npn | 1 | P61956 | 85.54 | 1e-48 |
X-RAY |
2014-10-15 | ILE | A:92 | A:84 | 1.0 | 0.006 | E | -98.4 | 133.8 | 1.0 | 0.006 | 0.0 |
HOH |
4.166 |
CA |
O |
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| 3zo5 | 2 | P61956 | 86.42 | 2e-48 |
X-RAY |
2014-01-29 | ILE | B:72 | B:84 | 0.0 | 0.0 | E | -109.6 | 136.9 | 0.0 | 0.0 | 0.0 |
HOH |
3.863 |
CA |
O |
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| 2io0 | 2 | P61956 | 86.42 | 4e-48 |
X-RAY |
2006-11-14 | ILE | B:72 | B:84 | 1.0 | 0.006 | E | -110.5 | 134.0 | 1.0 | 0.006 | 0.0 |
HOH |
3.670 |
CA |
O |
||
| 2iyd | 2 | P61956 | 86.42 | 6e-48 |
X-RAY |
2006-08-08 | ILE | B:70 | B:83 | 2.0 | 0.011 | E | -115.3 | 132.0 | 2.0 | 0.011 | 0.0 | ||||||
| 2mp2 | 2 | P55854 | 82.22 | 6e-48 |
NMR |
2014-07-02 | ILE | B:83 | B:83 | 0.0 | 0.0 | E | -140.1 | 102.0 | 0.0 | 0.0 | 0.0 | ||||||
| 4bkg | 1 | P61956 | 86.59 | 2e-47 |
X-RAY |
2013-11-06 | ILE | A:75 | A:84 | 2.0 | 0.011 | E | -100.1 | 132.9 | 2.0 | 0.011 | 0.0 |
HOH |
4.451 |
CA |
O |
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| 4bkg | 1 | P61956 | 86.59 | 2e-47 |
X-RAY |
2013-11-06 | ILE | A:159 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 5tvp | 3 | P61957 | 87.34 | 3e-47 |
X-RAY |
2017-10-11 | ILE | E:77 | Q:84 | 3.0 | 0.017 | E | -117.1 | 133.1 | NA | NA | NA | ||||||
| 3uin | 2 | P61956 | 86.25 | 5e-47 |
X-RAY |
2011-12-28 | ILE | B:71 | B:84 | 2.0 | 0.011 | E | -115.8 | 147.9 | 2.0 | 0.011 | 0.0 | ||||||
| 3uio | 2 | P61956 | 86.25 | 5e-47 |
X-RAY |
2011-12-28 | ILE | B:71 | B:84 | 2.0 | 0.011 | E | -100.9 | 135.5 | 2.0 | 0.011 | 0.0 |
HOH |
5.853 |
N |
O |
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| 2io1 | 2 | P55854 | 86.25 | 1e-46 |
X-RAY |
2006-11-14 | ILE | B:74 | B:83 | 1.0 | 0.006 | E | -102.6 | 127.0 | 1.0 | 0.006 | 0.0 |
HOH |
3.966 |
CA |
O |
||
| ILE | D:74 | D:83 | 2.0 | 0.011 | E | -99.7 | 128.0 | NA | NA | NA | |||||||||||||
| ILE | F:74 | F:83 | 1.0 | 0.006 | E | -109.1 | 129.8 | NA | NA | NA | |||||||||||||
| 1wm2 | 1 | P61956 | 87.18 | 2e-46 |
X-RAY |
2004-11-30 | ILE | A:73 | A:84 | 0.0 | 0.0 | E | -99.8 | 134.2 | 0.0 | 0.0 | 0.0 |
HOH |
4.218 |
CA |
O |
||
| 2io3 | 2 | P61956 | 86.08 | 3e-46 |
X-RAY |
2006-11-14 | ILE | B:72 | B:84 | 9.0 | 0.051 | E | -101.4 | -180.0 | 9.0 | 0.051 | 0.0 | ||||||
| 5d2m | 2 | P61956 | 86.08 | 4e-46 |
X-RAY |
2015-11-04 | ILE | B:74 | B:84 | 3.0 | 0.017 | E | -100.6 | 136.9 | 3.0 | 0.017 | 0.0 |
HOH |
4.926 |
O |
O |
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| ILE | E:74 | E:84 | 1.0 | 0.006 | E | -98.3 | 136.8 | 1.0 | 0.006 | 0.0 |
EDO HOH |
5.992 3.390 |
H HA |
HO1 O |
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| 2ckh | 2 | P61956 | 86.08 | 4e-46 |
X-RAY |
2006-04-26 | ILE | B:70 | B:83 | 2.0 | 0.011 | E | -111.9 | 127.3 | 2.0 | 0.011 | 0.0 | ||||||
| 2mp2 | 1 | P55854 | 86.08 | 4e-46 |
NMR |
2014-07-02 | ILE | A:73 | A:73 | 0.0 | 0.0 | E | -98.9 | 128.7 | 0.0 | 0.0 | 0.0 | ||||||
| 6nnq | 2 | P55854 | 85.9 | 3e-45 |
X-RAY |
2019-05-08 | ILE | B:69 | B:84 | 1.0 | 0.006 | E | -111.9 | 111.0 | 1.0 | 0.006 | 0.0 | ||||||
| 5elu | 2 | P61956 | 86.84 | 6e-45 |
X-RAY |
2016-11-16 | ILE | B:72 | B:84 | 1.0 | 0.006 | E | -106.2 | 125.2 | 1.0 | 0.006 | 0.0 |
HOH |
4.284 |
CA |
O |
||
| 5eql | 2 | P61956 | 86.84 | 6e-45 |
X-RAY |
2016-11-23 | ILE | B:72 | B:84 | 3.0 | 0.017 | E | -90.8 | 141.0 | 3.0 | 0.017 | 0.0 |
HOH |
4.440 |
CA |
O |
||
| 6k5r | 1 | P55854 | 85.71 | 2e-44 |
NMR |
2019-08-07 | ILE | A:69 | A:84 | 1.0 | 0.006 | E | -112.3 | 136.0 | 1.0 | 0.006 | 0.0 | ||||||
| 1wm3 | 1 | P61956 | 87.5 | 3e-42 |
X-RAY |
2004-11-30 | ILE | A:68 | A:84 | 1.0 | 0.006 | E | -96.0 | 133.1 | 1.0 | 0.006 | 0.0 |
HOH |
4.310 |
CA |
O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q6eev6-f1 | 1 | Q6EEV6 | 98.95 | 1e-67 | ILE | A:84 | A:84 | 1.0 | 0.006 | E | -102.0 | 125.4 | |
| af-p61956-f1 | 1 | P61956 | 85.26 | 3e-56 | ILE | A:84 | A:84 | 1.0 | 0.006 | E | -99.1 | 124.8 | |
| af-p55854-f1 | 1 | P55854 | 82.98 | 1e-51 | ILE | A:83 | A:83 | 1.0 | 0.006 | E | -96.9 | 123.3 | |