Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 149721790 . A C CCDS34549.1:NM_001002255.1:c.263cAa>cCa_NP_001002255.1:p.88Q>P Homo sapiens small ubiquitin-like modifier 4 (SUMO4), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2n9e 2 P61956 85.26 7e-56 NMR
 2016-01-20 GLN B:88 B:88 154.0 0.856 -77.3 177.9 154.0 0.856 0.0
6jxw 1 P61956 85.26 7e-56 NMR
 2020-02-05 GLN A:88 A:88 106.0 0.589 E -97.9 146.4 106.0 0.589 0.0
6jxx 1 P61956 85.26 7e-56 NMR
 2020-02-05 GLN A:88 A:88 108.0 0.6 E -111.4 143.8 108.0 0.6 0.0
2d07 2 P61956 84.95 5e-54 X-RAY
 2006-06-06 GLN B:88 B:88 95.0 0.528 E -91.9 106.0 89.0 0.494 0.034 A:Q13569:0.033
 HOH
 3.534
 NE2
 O
2rpq 1 P61956 84.95 5e-54 NMR
 2008-10-07 GLN A:88 A:88 141.0 0.783 E -89.6 120.3 141.0 0.783 0.0
2n1w 1 P61956 84.95 1e-53 NMR
 2016-04-20 GLN A:102 A:88 38.0 0.211 E -102.7 111.1 38.0 0.211 0.0
5ghb 1 P61956 84.95 1e-53 NMR
 2017-06-07 GLN A:102 A:88 63.0 0.35 -111.8 109.1 63.0 0.35 0.0
5ghc 1 P61956 84.95 1e-53 NMR
 2017-06-07 GLN A:102 A:88 79.0 0.439 E -86.0 116.0 79.0 0.439 0.0
5tvq 2 P61957 86.9 5e-50 X-RAY
 2017-09-27 GLN B:81 B:88 167.0 0.928 -79.5 360.0 167.0 0.928 0.0 HOH
 3.261
 O
 O
4npn 1 P61956 85.54 1e-48 X-RAY
 2014-10-15 GLN A:96 NA:NA DO NA DO DO DO NA NA NA
3zo5 2 P61956 86.42 2e-48 X-RAY
 2014-01-29 GLN B:76 B:88 101.0 0.561 E -68.6 151.0 99.0 0.55 0.011 A:Q9HC62:0.011
 HOH
 6.291
 O
 O
2io0 2 P61956 86.42 4e-48 X-RAY
 2006-11-14 GLN B:76 B:88 121.0 0.672 E -84.9 149.8 119.0 0.661 0.011 A:Q9HC62:0.011
 HOH
 2.997
 O
 O
2iyd 2 P61956 86.42 6e-48 X-RAY
 2006-08-08 GLN B:74 B:87 129.0 0.717 E -74.6 162.8 126.0 0.7 0.017 A:Q9P0U3:0.017
2mp2 2 P55854 82.22 6e-48 NMR
 2014-07-02 GLN B:87 B:87 22.0 0.122 -147.0 109.8 22.0 0.122 0.0
4bkg 1 P61956 86.59 2e-47 X-RAY
 2013-11-06 GLN A:79 A:88 162.0 0.9 E -77.4 156.7 162.0 0.9 0.0 HOH
 3.174
 OE1
 O
4bkg 1 P61956 86.59 2e-47 X-RAY
 2013-11-06 GLN A:163 NA:NA DO NA DO DO DO NA NA NA
5tvp 3 P61957 87.34 3e-47 X-RAY
 2017-10-11 GLN E:81 Q:88 163.0 0.906 -104.5 360.0 NA NA NA
3uin 2 P61956 86.25 5e-47 X-RAY
 2011-12-28 GLN B:75 B:88 110.0 0.611 E -65.9 130.3 14.0 0.078 0.533 A:P63279:0.533
 HOH
 2.224
 NE2
 O
3uio 2 P61956 86.25 5e-47 X-RAY
 2011-12-28 GLN B:75 B:88 100.0 0.556 E -65.1 130.8 11.0 0.061 0.495 A:P63279:0.494
 HOH
 4.302
 CB
 O
2io1 2 P55854 86.25 1e-46 X-RAY
 2006-11-14 GLN B:78 B:87 131.0 0.728 E -87.1 162.2 129.0 0.717 0.011 A:Q9HC62:0.011
 HOH
 3.191
 O
 O
GLN D:78 D:87 77.0 0.428 E -85.6 154.2 NA NA NA
GLN F:78 F:87 130.0 0.722 E -100.8 146.3 NA NA NA
1wm2 1 P61956 87.18 2e-46 X-RAY
 2004-11-30 GLN A:77 A:88 108.0 0.6 E -95.3 138.0 90.0 0.5 0.1 A:P61956:0.1
 HOH
 3.710
 CG
 O
2io3 2 P61956 86.08 3e-46 X-RAY
 2006-11-14 GLN B:76 B:88 93.0 0.517 E -77.9 138.7 90.0 0.5 0.017 A:Q9HC62:0.017
5d2m 2 P61956 86.08 4e-46 X-RAY
 2015-11-04 GLN B:78 B:88 91.0 0.506 E -74.6 126.3 5.0 0.028 0.478 A:P63279:0.478
 HOH
 2.202
 HE22
 O
GLN E:78 E:88 115.0 0.639 E -85.0 141.5 115.0 0.639 0.0 HOH
 2.092
 H
 O
2ckh 2 P61956 86.08 4e-46 X-RAY
 2006-04-26 GLN B:74 B:87 135.0 0.75 E -74.4 149.3 133.0 0.739 0.011 A:Q9P0U3:0.011
2mp2 1 P55854 86.08 4e-46 NMR
 2014-07-02 GLN A:77 A:77 70.0 0.389 S -86.9 111.4 70.0 0.389 0.0
6nnq 2 P55854 85.9 3e-45 X-RAY
 2019-05-08 GLN B:73 B:88 121.0 0.672 E -107.0 169.4 118.0 0.656 0.016 A:Q9P0U3:0.017
 HOH
 6.604
 O
 O
5elu 2 P61956 86.84 6e-45 X-RAY
 2016-11-16 GLN B:76 B:88 107.0 0.594 E -93.1 155.8 107.0 0.594 0.0 SO4
HOH
 7.370
5.051
 O
NE2
 O1
O
5eql 2 P61956 86.84 6e-45 X-RAY
 2016-11-23 GLN B:76 B:88 155.0 0.861 E -76.5 135.9 155.0 0.861 0.0
6k5r 1 P55854 85.71 2e-44 NMR
 2019-08-07 GLN A:73 A:88 106.0 0.589 E -118.1 150.9 106.0 0.589 0.0
1wm3 1 P61956 87.5 3e-42 X-RAY
 2004-11-30 GLN A:72 A:88 162.0 0.9 -75.0 360.0 162.0 0.9 0.0 HOH
 2.042
 OE1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q6eev6-f1 1 Q6EEV6 98.95 1e-67 GLN A:88 A:88 105.0 0.583 E -75.7 125.3
af-p61956-f1 1 P61956 85.26 3e-56 GLN A:88 A:88 102.0 0.567 E -70.0 129.3
af-p55854-f1 1 P55854 82.98 1e-51 GLN A:87 A:87 110.0 0.611 E -72.0 129.8