Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 32557431 . C A CCDS47409.1:NM_002124.3:c.89gGg>gTg_NP_002115.2:p.30G>V Homo sapiens major histocompatibility complex, class II, DR beta 1 (HLA-DRB1), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wbj 2 P01911 99.5 7e-150 X-RAY
2009-04-07 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
GLY F:1 NA:NA DO NA DO DO DO NA NA NA
1ymm 2 Q29790 100.0 9e-150 X-RAY
2005-05-03 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
5v4m 2 P01911 100.0 8e-144 X-RAY
2017-05-03 GLY B:27 NA:NA DO NA DO DO DO NA NA NA
GLY D:27 NA:NA DO NA DO DO DO NA NA NA
GLY F:27 NA:NA DO NA DO DO DO NA NA NA
GLY H:27 NA:NA DO NA DO DO DO NA NA NA
6cpo 2 D7RIH9 99.47 1e-142 X-RAY
2018-06-06 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
GLY E:1 E:1 111.0 1.0 360.0 89.3 NA NA NA
6cqq 2 D7RIH9 99.47 1e-142 X-RAY
2018-06-06 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
GLY G:1 NA:NA DO NA DO DO DO NA NA NA
3pdo 2 P04229 93.43 9e-138 X-RAY
2010-12-08 GLY B:2 B:1 54.0 0.72 130.0 153.4 48.0 0.64 0.08 A:P01903:0.08
HOH
5.731
C
O
3pgc 2 P04229 93.43 9e-138 X-RAY
2010-12-08 GLY B:2 B:1 126.0 1.0 360.0 -6.4 122.0 1.0 0.0 A:P01903:0.053
HOH
3.451
N
O
GLY E:2 NA:NA DO NA DO DO DO NA NA NA
3pgd 2 P04229 93.43 9e-138 X-RAY
2010-12-08 GLY B:2 B:1 63.0 0.84 -113.3 -174.0 54.0 0.72 0.12 A:P01903:0.12
HOH
7.458
O
O
GLY E:2 E:1 61.0 0.813 -114.1 -169.8 NA NA NA
4aen 2 P04229 93.43 9e-138 X-RAY
2012-08-01 GLY B:2 NA:NA DO NA DO DO DO NA NA NA
4x5w 2 P04229 93.43 9e-138 X-RAY
2016-03-09 GLY B:2 NA:NA DO NA DO DO DO NA NA NA
1aqd 2 P04229 93.43 9e-138 X-RAY
1998-01-28 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
GLY E:1 NA:NA DO NA DO DO DO NA NA NA
GLY H:1 NA:NA DO NA DO DO DO NA NA NA
GLY K:1 NA:NA DO NA DO DO DO NA NA NA
4fqx 5 P04229 89.6 1e-133 X-RAY
2013-01-09 GLY E:7 B:1 79.0 1.0 S -59.6 139.5 73.0 0.973 0.027 D:P01903:0.08
NAG
NAG
HOH
5.051
3.085
5.485
O
O
CA
O3
O6
O
4gbx 4 P04229 89.6 1e-133 X-RAY
2013-01-16 GLY D:7 B:1 63.0 0.84 S -110.8 -124.6 NA NA NA
3l6f 2 P04229 93.23 3e-133 X-RAY
2010-05-12 GLY B:2 B:1 57.0 0.76 -106.1 -154.7 51.0 0.68 0.08 A:P01903:0.08
HOH
4.043
CA
O
3s4s 2 P04229 93.23 3e-133 X-RAY
2011-09-21 GLY B:2 B:1 50.0 0.667 89.1 163.3 43.0 0.573 0.094 A:P01903:0.093
GLY F:2 E:1 49.0 0.653 85.7 176.5 NA NA NA
3s5l 2 P04229 93.23 3e-133 X-RAY
2011-09-21 GLY C:2 B:1 52.0 0.693 87.2 158.7 45.0 0.6 0.093 A:P01903:0.093
HOH
5.654
O
O
GLY D:2 E:1 56.0 0.747 -105.3 -152.1 NA NA NA
1fyt 2 P04229 93.23 3e-133 X-RAY
2000-11-08 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
1seb 2 P04229 93.23 3e-133 X-RAY
1996-06-20 GLY B:1 B:1 115.0 1.0 360.0 -79.2 101.0 1.0 0.0 A:P01903:0.187
GLY F:1 F:1 115.0 1.0 360.0 -79.1 102.0 1.0 0.0 E:P01903:0.173
5v4n 2 P04229 93.19 5e-132 X-RAY
2017-05-03 GLY B:27 NA:NA DO NA DO DO DO NA NA NA
GLY D:27 NA:NA DO NA DO DO DO NA NA NA
6hby 2 P04229 93.16 5e-132 X-RAY
2019-08-14 GLY B:2 B:1 84.0 1.0 -48.1 -27.1 84.0 1.0 0.0 EDO
HOH
8.539
3.028
O
O
C2
O
GLY E:2 E:1 125.0 1.0 360.0 -101.0 NA NA NA
6qza 2 P04229 93.16 5e-132 X-RAY
2020-07-15 GLY B:2 BBB:1 111.0 1.0 360.0 46.0 108.0 1.0 0.0 A:P01903:0.04
GLY E:2 NA:NA DO NA DO DO DO NA NA NA
6qzc 2 P04229 93.16 5e-132 X-RAY
2020-07-15 GLY B:2 BBB:1 65.0 0.867 -99.7 16.1 65.0 0.867 0.0 PEG
GOL
HOH
8.635
5.822
2.867
N
N
O
O4
O1
O
6qzd 2 P04229 93.16 5e-132 X-RAY
2020-07-15 GLY B:2 BBB:1 95.0 1.0 -74.8 80.4 95.0 1.0 0.0 EDO
GOL
HOH
5.802
7.818
8.994
N
C
N
O1
O3
O
GLY E:2 EEE:1 64.0 0.853 105.7 -18.5 NA NA NA
6r0e 2 P04229 93.16 5e-132 X-RAY
2020-07-15 GLY B:2 BBB:1 77.0 1.0 -58.5 -25.7 77.0 1.0 0.0 EDO
HOH
7.631
7.989
O
N
C2
O
1hxy 2 P04229 93.16 7e-132 X-RAY
2001-06-27 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
1jwm 2 P04229 93.16 7e-132 X-RAY
2003-07-08 GLY B:1 B:1 127.0 1.0 360.0 -160.0 127.0 1.0 0.0 HOH
3.707
C
O
1jws 2 P04229 93.16 7e-132 X-RAY
2003-07-08 GLY B:1 B:1 122.0 1.0 360.0 166.8 122.0 1.0 0.0 HOH
6.558
O
O
1jwu 2 P04229 93.16 7e-132 X-RAY
2003-07-08 GLY B:1 B:1 132.0 1.0 360.0 -153.7 132.0 1.0 0.0 HOH
3.240
O
O
1klg 2 P04229 93.16 7e-132 X-RAY
2002-08-02 GLY B:1 B:1 133.0 1.0 360.0 -173.1 133.0 1.0 0.0 HOH
3.082
O
O
1klu 2 P04229 93.16 7e-132 X-RAY
2002-08-02 GLY B:1 B:1 126.0 1.0 360.0 174.3 126.0 1.0 0.0 HOH
2.586
N
O
1lo5 2 P04229 93.16 7e-132 X-RAY
2002-12-18 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
1pyw 2 P13758 93.16 7e-132 X-RAY
2003-12-09 GLY B:1 B:1 127.0 1.0 360.0 150.9 127.0 1.0 0.0 HOH
3.149
O
O
1r5i 2 P04229 93.16 7e-132 X-RAY
2004-03-16 GLY B:1 B:1 136.0 1.0 360.0 2.6 133.0 1.0 0.0 A:P01903:0.04
HOH
6.913
N
O
GLY F:1 F:1 138.0 1.0 360.0 3.4 NA NA NA
1sje 2 P04229 93.16 7e-132 X-RAY
2004-08-17 GLY B:1 B:1 122.0 1.0 360.0 170.2 122.0 1.0 0.0 HOH
8.162
C
O
1sjh 2 P04229 93.16 7e-132 X-RAY
2004-08-17 GLY B:1 B:1 123.0 1.0 360.0 171.2 123.0 1.0 0.0 HOH
8.368
C
O
1t5w 2 P04229 93.16 7e-132 X-RAY
2004-08-17 GLY B:1 B:1 128.0 1.0 360.0 138.8 128.0 1.0 0.0 HOH
8.203
C
O
GLY E:1 E:1 137.0 1.0 360.0 177.2 NA NA NA
1t5x 2 P04229 93.16 7e-132 X-RAY
2004-08-17 GLY B:1 B:1 125.0 1.0 360.0 178.0 125.0 1.0 0.0 HOH
5.291
C
O
2g9h 2 P04229 93.16 7e-132 X-RAY
2006-07-11 GLY B:1 B:1 126.0 1.0 360.0 170.8 126.0 1.0 0.0 SO4
DIO
HOH
8.377
7.624
3.042
C
C
CA
O2
C2
O
2iam 2 P04229 93.16 7e-132 X-RAY
2007-04-03 GLY B:1 B:1 125.0 1.0 360.0 178.1 118.0 1.0 0.0 A:P01903:0.093
2ian 2 P04229 93.16 7e-132 X-RAY
2007-04-03 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
GLY G:1 NA:NA DO NA DO DO DO NA NA NA
GLY L:1 NA:NA DO NA DO DO DO NA NA NA
GLY Q:1 NA:NA DO NA DO DO DO NA NA NA
2icw 2 P04229 93.16 7e-132 X-RAY
2007-03-20 GLY B:1 B:1 122.0 1.0 360.0 144.6 122.0 1.0 0.0 HOH
8.617
C
O
GLY E:1 E:1 119.0 1.0 360.0 145.2 NA NA NA
2ipk 2 P04229 93.16 7e-132 X-RAY
2007-03-13 GLY B:1 B:1 128.0 1.0 360.0 -91.5 128.0 1.0 0.0 HOH
2.878
N
O
2oje 2 P04229 93.16 7e-132 X-RAY
2007-01-23 GLY B:1 B:1 133.0 1.0 360.0 -47.5 127.0 1.0 0.0 A:P01903:0.08
HOH
8.279
N
O
GLY F:1 F:1 132.0 1.0 360.0 -47.9 NA NA NA
2xn9 5 P04229 93.16 7e-132 X-RAY
2010-11-24 GLY E:1 NA:NA DO NA DO DO DO NA NA NA
3qxa 2 P04229 93.16 7e-132 X-RAY
2011-11-16 GLY B:1 B:1 112.0 1.0 360.0 -154.9 112.0 1.0 0.0 HOH
8.534
O
O
GLY D:1 E:1 117.0 1.0 360.0 -149.4 NA NA NA
3qxd 2 P04229 93.16 7e-132 X-RAY
2011-11-16 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
GLY D:1 NA:NA DO NA DO DO DO NA NA NA
4c56 5 A9JJF6 93.16 7e-132 X-RAY
2014-07-23 GLY E:1 NA:NA DO NA DO DO DO NA NA NA
GLY K:1 NA:NA DO NA DO DO DO NA NA NA
4e41 2 P04229 93.16 7e-132 X-RAY
2012-08-29 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
GLY G:1 NA:NA DO NA DO DO DO NA NA NA
4ov5 2 P04229 93.16 7e-132 X-RAY
2014-07-16 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
GLY D:1 NA:NA DO NA DO DO DO NA NA NA
GLY F:1 NA:NA DO NA DO DO DO NA NA NA
GLY H:1 K:1 118.0 1.0 360.0 -57.4 NA NA NA
GLY J:1 NA:NA DO NA DO DO DO NA NA NA
GLY L:1 NA:NA DO NA DO DO DO NA NA NA
6cqr 2 P04229 93.16 7e-132 X-RAY
2018-06-06 GLY B:1 B:1 128.0 1.0 360.0 -122.9 121.0 1.0 0.0 A:P01903:0.093
NAG
HOH
4.511
3.796
C
O
O3
O
GLY G:1 G:1 128.0 1.0 360.0 -122.2 NA NA NA
1d5m 2 P13760 91.67 1e-131 X-RAY
2000-06-28 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
1j8h 2 P13760 91.67 1e-131 X-RAY
2002-03-13 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
1d5x 2 P13760 91.15 4e-131 X-RAY
2000-06-28 GLY B:1 B:1 127.0 1.0 360.0 -96.6 90.0 1.0 0.0 A:P01903:0.493
1d5z 2 P13760 91.15 4e-131 X-RAY
2000-06-28 GLY B:1 B:1 118.0 1.0 360.0 178.2 116.0 1.0 0.0 A:P01903:0.027
HOH
5.711
CA
O
1d6e 2 P13760 91.15 4e-131 X-RAY
2000-06-28 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
2seb 2 P13760 91.15 4e-131 X-RAY
1998-01-28 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
4is6 2 P13760 91.15 4e-131 X-RAY
2013-10-23 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
4md5 2 P13760 88.44 5e-131 X-RAY
2013-12-04 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
6bix 2 Q29890 88.44 5e-131 X-RAY
2018-01-17 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
6biy 2 Q29890 88.44 5e-131 X-RAY
2018-01-17 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
6biz 2 Q29890 88.44 5e-131 X-RAY
2018-01-17 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
4mdi 2 P13760 88.44 7e-131 X-RAY
2013-12-04 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
4mdj 2 P13760 88.44 7e-131 X-RAY
2013-12-04 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
4mcy 2 P13760 87.94 3e-130 X-RAY
2013-11-27 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
4mcz 2 P13760 87.94 3e-130 X-RAY
2013-12-04 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
4md0 2 P13760 87.94 3e-130 X-RAY
2013-12-04 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
4md4 2 P13760 87.94 3e-130 X-RAY
2013-12-04 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
4y19 2 P13760 87.94 3e-130 X-RAY
2015-09-23 GLY B:3 B:1 50.0 0.667 -99.3 173.2 50.0 0.667 0.0 NAG
NAG
HOH
4.252
3.909
2.602
CA
CA
O
O3
O5
O
4y1a 2 P13760 87.94 3e-130 X-RAY
2015-09-23 GLY B:3 B:1 56.0 0.747 -88.7 178.4 56.0 0.747 0.0 NAG
NAG
5.685
3.610
CA
CA
O3
C6
6bil 2 P13760 87.94 3e-130 X-RAY
2018-01-17 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
6bin 3 P13760 87.94 3e-130 X-RAY
2018-01-17 GLY C:3 NA:NA DO NA DO DO DO NA NA NA
6biv 2 P13760 87.94 3e-130 X-RAY
2018-01-17 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
6nix 2 P13760 87.94 3e-130 X-RAY
2020-01-22 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
5jlz 2 P13760 90.62 4e-130 X-RAY
2016-12-07 GLY B:1 B:1 123.0 1.0 360.0 -46.6 100.0 1.0 0.0 A:P01903:0.307
HOH
2.933
N
O
GLY D:1 NA:NA DO NA DO DO DO NA NA NA
5lax 2 P13760 90.62 4e-130 X-RAY
2016-12-07 GLY B:1 B:1 127.0 1.0 360.0 -64.7 106.0 1.0 0.0 A:P01903:0.28
HOH
3.025
O
O
GLY D:1 NA:NA DO NA DO DO DO NA NA NA
5ni9 2 P13760 90.62 4e-130 X-RAY
2018-06-13 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
5nig 2 P13760 90.62 4e-130 X-RAY
2018-06-13 GLY B:1 B:1 130.0 1.0 360.0 -176.3 130.0 1.0 0.0 HOH
3.623
O
O
6atf 2 A0A0A1I7H6 91.1 1e-129 X-RAY
2017-09-13 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
GLY D:3 NA:NA DO NA DO DO DO NA NA NA
6ati 2 A0A0A1I7H6 91.1 1e-129 X-RAY
2017-09-13 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
GLY D:3 NA:NA DO NA DO DO DO NA NA NA
6v0y 2 P13760 87.88 2e-129 X-RAY
2020-11-25 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
6v13 2 P13760 87.88 2e-129 X-RAY
2020-11-25 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
6v15 2 P13760 87.88 2e-129 X-RAY
2020-11-25 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
6v18 2 P13760 87.88 2e-129 X-RAY
2020-11-25 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
6v19 2 P13760 87.88 2e-129 X-RAY
2020-11-25 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
6v1a 2 P13760 87.88 2e-129 X-RAY
2020-11-25 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
6bir 2 P79552 90.58 6e-129 X-RAY
2018-01-17 GLY B:3 NA:NA DO NA DO DO DO NA NA NA
6cpl 2 P20039 91.58 2e-128 X-RAY
2018-06-06 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
6cpn 2 P20039 91.58 2e-128 X-RAY
2018-06-06 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
6cql 2 P20039 91.58 2e-128 X-RAY
2018-06-06 GLY B:1 B:1 117.0 1.0 360.0 -168.6 117.0 1.0 0.0 NAG
HOH
5.487
7.199
C
CA
O3
O
6cqn 2 P20039 91.58 2e-128 X-RAY
2018-06-06 GLY B:1 B:1 121.0 1.0 360.0 -149.0 99.0 1.0 0.0 A:P01903:0.293
NAG
HOH
4.806
6.418
CA
C
C8
O
1zgl 2 Q29787 88.54 2e-126 X-RAY
2005-10-18 GLY B:1 B:1 60.0 0.8 360.0 162.0 34.0 0.453 0.347 A:P01903:0.347
GLY G:1 NA:NA DO NA DO DO DO NA NA NA
GLY L:1 H:1 45.0 0.6 360.0 4.7 NA NA NA
GLY Q:1 K:1 70.0 0.933 360.0 86.6 NA NA NA
1fv1 2 Q30154 88.95 1e-125 X-RAY
2000-09-27 GLY B:1 B:1 127.0 1.0 360.0 16.4 123.0 1.0 0.0 A:P01903:0.053
HOH
3.235
O
O
GLY E:1 E:1 127.0 1.0 360.0 13.4 NA NA NA
1h15 2 Q30126 88.95 1e-125 X-RAY
2002-10-03 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
GLY E:1 NA:NA DO NA DO DO DO NA NA NA
1hqr 2 Q29703 88.95 1e-125 X-RAY
2001-01-03 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
3c5j 2 Q6YJU6 88.42 2e-124 X-RAY
2008-08-05 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
2q6w 2 P79483 87.89 2e-123 X-RAY
2007-07-24 GLY B:1 NA:NA DO NA DO DO DO NA NA NA
GLY E:1 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p01911-f1 1 P01911 100.0 0.0 GLY A:30 A:30 57.0 0.76 -52.5 161.1
af-q30154-f1 1 Q30154 88.72 5e-168 GLY A:30 A:30 54.0 0.72 -51.0 151.7
af-p79483-f1 1 P79483 89.1 1e-167 GLY A:30 A:30 50.0 0.667 -58.2 156.5
af-p13762-f1 1 P13762 87.59 1e-166 GLY A:30 A:30 55.0 0.733 -51.1 145.0