Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42928593 . G A CCDS4876.1:NM_018960.4:c.88Gtg>Atg_NP_061833.1:p.30V>M Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
 2006-09-26 VAL A:30 A:29 22.0 0.142 H -107.3 -39.3 22.0 0.142 0.0
VAL B:30 B:29 16.0 0.103 H -111.1 -35.4 16.0 0.103 0.0 HOH
 4.785
 N
 O
1r74 1 Q14749 100.0 0.0 X-RAY
 2004-09-21 VAL A:29 A:29 20.0 0.129 H -98.7 -28.3 20.0 0.129 0.0
VAL B:29 B:29 16.0 0.103 H -89.1 -26.8 16.0 0.103 0.0
1bhj 1 P13255 92.15 0.0 X-RAY
 1999-01-06 VAL A:29 A:29 1.0 0.006 H -72.5 -55.4 1.0 0.006 0.0 HOH
 4.011
 N
 O
VAL B:29 B:29 2.0 0.013 H -66.7 -54.2 2.0 0.013 0.0 HOH
 3.737
 CG2
 O
1d2c 1 P13255 92.15 0.0 X-RAY
 1999-10-06 VAL A:29 A:29 5.0 0.032 H -78.6 -32.3 5.0 0.032 0.0 HOH
 3.109
 CG2
 O
VAL B:29 B:29 4.0 0.026 H -56.3 -32.0 4.0 0.026 0.0 HOH
 7.781
 CG1
 O
1kia 1 P13255 92.15 0.0 X-RAY
 2003-06-10 VAL A:29 A:29 1.0 0.006 H -112.7 13.6 1.0 0.006 0.0 SAM
HOH
 9.368
7.006
 O
CG1
 OXT
O
VAL B:29 B:29 1.0 0.006 H -113.2 12.0 1.0 0.006 0.0 SAM
HOH
 9.950
6.148
 O
N
 OXT
O
VAL C:29 C:29 2.0 0.013 T -110.4 12.8 2.0 0.013 0.0 SAM
HOH
 9.617
5.294
 O
CG1
 OXT
O
VAL D:29 D:29 1.0 0.006 H -115.4 14.2 1.0 0.006 0.0 SAM
HOH
 9.260
3.610
 O
CG1
 OXT
O
1nbh 1 P13255 92.15 0.0 X-RAY
 2003-03-04 VAL A:29 A:29 0.0 0.0 T -116.5 13.1 0.0 0.0 0.0 SAM
HOH
 9.334
6.305
 O
N
 OXT
O
VAL B:29 B:29 0.0 0.0 T -118.5 13.1 0.0 0.0 0.0 SAM
HOH
 9.335
7.862
 O
N
 OXT
O
VAL C:29 C:29 0.0 0.0 H -115.9 10.9 0.0 0.0 0.0 SAM
HOH
 9.387
6.540
 O
CG1
 OXT
O
VAL D:29 D:29 0.0 0.0 T -116.5 13.0 0.0 0.0 0.0 SAM
HOH
 9.302
5.995
 O
CG1
 OXT
O
1xva 1 P13255 92.15 0.0 X-RAY
 1997-01-27 VAL A:29 A:29 4.0 0.026 H -68.9 -36.9 4.0 0.026 0.0 ACT
HOH
 8.263
4.769
 O
N
 O
O
VAL B:29 B:29 3.0 0.019 H -65.5 -36.9 3.0 0.019 0.0 ACT
HOH
 7.937
8.517
 O
CG2
 O
O
2idj 1 P13255 92.15 0.0 X-RAY
 2006-12-19 VAL A:29 A:29 16.0 0.103 H -59.0 -42.3 16.0 0.103 0.0
VAL B:29 B:29 0.0 0.0 H -64.7 -42.4 0.0 0.0 0.0 HOH
 9.491
 O
 O
VAL C:29 C:29 13.0 0.084 H -56.3 -42.4 13.0 0.084 0.0
VAL D:29 D:29 1.0 0.006 H -68.4 -47.0 1.0 0.006 0.0 HOH
 8.212
 CG2
 O
2idk 1 P13255 92.15 0.0 X-RAY
 2006-12-19 VAL A:29 A:29 15.0 0.097 H -69.9 -37.0 15.0 0.097 0.0
VAL B:29 B:29 0.0 0.0 H -68.6 -37.1 0.0 0.0 0.0
VAL C:29 C:29 20.0 0.129 H -70.2 -36.4 20.0 0.129 0.0
VAL D:29 D:29 0.0 0.0 H -67.8 -36.8 0.0 0.0 0.0
3thr 1 P13255 92.15 0.0 X-RAY
 2011-11-16 VAL A:30 A:29 0.0 0.0 H -68.4 -35.6 0.0 0.0 0.0 TAM
HOH
 9.201
5.756
 O
N
 O5
O
VAL B:30 B:29 1.0 0.006 H -59.4 -37.8 1.0 0.006 0.0 HOH
 4.927
 N
 O
VAL C:30 C:29 0.0 0.0 H -76.5 -38.1 0.0 0.0 0.0 TAM
HOH
 9.220
3.154
 O
CG2
 O6
O
VAL D:30 D:29 0.0 0.0 H -70.1 -36.3 0.0 0.0 0.0 TAM
HOH
 8.795
4.762
 O
N
 O4
O
3ths 1 P13255 92.15 0.0 X-RAY
 2011-11-16 VAL A:30 A:29 1.0 0.006 H -68.1 -33.7 1.0 0.006 0.0 HOH
 7.858
 CG2
 O
VAL B:30 B:29 0.0 0.0 H -69.2 -41.6 0.0 0.0 0.0 HOH
 6.973
 N
 O
VAL C:30 C:29 1.0 0.006 H -66.2 -40.8 1.0 0.006 0.0 HOH
 8.904
 N
 O
VAL D:30 D:29 0.0 0.0 H -64.8 -35.0 0.0 0.0 0.0
1d2g 1 P13255 91.81 0.0 X-RAY
 1999-10-25 VAL A:29 A:29 5.0 0.032 H -82.1 -31.7 5.0 0.032 0.0 HOH
 4.676
 N
 O
VAL B:29 B:29 5.0 0.032 H -71.2 -32.6 5.0 0.032 0.0 HOH
 5.578
 CG2
 O
1d2h 1 P13255 91.81 0.0 X-RAY
 1999-10-25 VAL A:29 NA:NA DO NA DO DO DO NA NA NA
VAL B:29 NA:NA DO NA DO DO DO NA NA NA
VAL C:29 NA:NA DO NA DO DO DO NA NA NA
VAL D:29 NA:NA DO NA DO DO DO NA NA NA
1nbi 1 P13255 91.81 0.0 X-RAY
 2003-03-04 VAL A:29 A:29 0.0 0.0 H -102.1 -4.1 0.0 0.0 0.0 SAM
HOH
 9.628
7.694
 O
O
 OXT
O
VAL B:29 B:29 1.0 0.006 H -100.4 -3.6 1.0 0.006 0.0 SAM
HOH
 9.589
9.372
 O
N
 OXT
O
VAL C:29 C:29 2.0 0.013 H -120.4 2.8 2.0 0.013 0.0 SAM
HOH
 9.891
5.113
 O
CG1
 OXT
O
VAL D:29 D:29 2.0 0.013 H -119.0 1.9 2.0 0.013 0.0 SAM
HOH
 9.895
9.293
 O
CG2
 OXT
O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 VAL A:29 A:29 7.0 0.045 H -68.1 -35.3 7.0 0.045 0.0
VAL B:29 B:29 3.0 0.019 H -68.8 -38.5 3.0 0.019 0.0
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 VAL A:29 A:29 8.0 0.052 H -71.6 -37.4 8.0 0.052 0.0
VAL B:29 B:29 1.0 0.006 H -65.0 -43.9 1.0 0.006 0.0
VAL C:29 C:29 2.0 0.013 H -67.1 -33.5 2.0 0.013 0.0
VAL D:29 D:29 4.0 0.026 H -75.7 -37.4 4.0 0.026 0.0
VAL E:29 E:29 3.0 0.019 H -62.2 -42.0 NA NA NA
VAL F:29 F:29 5.0 0.032 H -74.1 -33.1 NA NA NA
VAL G:29 G:29 4.0 0.026 H -58.3 -38.1 NA NA NA
VAL H:29 H:29 7.0 0.045 H -78.0 -35.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 VAL A:30 A:30 0.0 0.0 H -83.9 -14.7