Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42928654 . T A CCDS4876.1:NM_018960.4:c.149cTt>cAt_NP_061833.1:p.50L>H Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
 2006-09-26 LEU A:50 A:49 15.0 0.088 H -57.6 -41.2 15.0 0.088 0.0
LEU B:50 B:49 13.0 0.076 H -52.5 -40.9 13.0 0.076 0.0 CL
HOH
 7.614
4.098
 CD2
CB
 CL
O
1r74 1 Q14749 100.0 0.0 X-RAY
 2004-09-21 LEU A:49 A:49 31.0 0.182 H -57.2 -39.2 31.0 0.182 0.0
LEU B:49 B:49 12.0 0.071 H -46.4 -47.2 12.0 0.071 0.0 HOH
 4.025
 O
 O
1bhj 1 P13255 92.15 0.0 X-RAY
 1999-01-06 LEU A:49 A:49 7.0 0.041 H -50.0 -66.2 7.0 0.041 0.0 HOH
 4.041
 CD2
 O
LEU B:49 B:49 8.0 0.047 H -61.6 -47.8 8.0 0.047 0.0 HOH
 5.625
 CD1
 O
1d2c 1 P13255 92.15 0.0 X-RAY
 1999-10-06 LEU A:49 A:49 8.0 0.047 H -54.9 -48.7 8.0 0.047 0.0 HOH
 4.508
 CD2
 O
LEU B:49 B:49 10.0 0.059 H -56.4 -52.2 10.0 0.059 0.0
1kia 1 P13255 92.15 0.0 X-RAY
 2003-06-10 LEU A:49 A:49 8.0 0.047 H -59.2 -49.5 8.0 0.047 0.0 HOH
 6.962
 CD1
 O
LEU B:49 B:49 9.0 0.053 H -59.5 -49.1 9.0 0.053 0.0 HOH
 5.503
 CG
 O
LEU C:49 C:49 9.0 0.053 H -59.6 -49.5 9.0 0.053 0.0 HOH
 4.570
 CD2
 O
LEU D:49 D:49 8.0 0.047 H -60.1 -47.4 8.0 0.047 0.0 HOH
 4.362
 CB
 O
1nbh 1 P13255 92.15 0.0 X-RAY
 2003-03-04 LEU A:49 A:49 4.0 0.024 H -60.1 -46.2 4.0 0.024 0.0 HOH
 6.762
 CD1
 O
LEU B:49 B:49 4.0 0.024 H -61.5 -45.1 4.0 0.024 0.0 HOH
 8.298
 O
 O
LEU C:49 C:49 4.0 0.024 H -61.1 -45.5 4.0 0.024 0.0 HOH
 3.244
 CD2
 O
LEU D:49 D:49 4.0 0.024 H -61.0 -47.1 4.0 0.024 0.0 HOH
 4.037
 CD2
 O
1xva 1 P13255 92.15 0.0 X-RAY
 1997-01-27 LEU A:49 A:49 9.0 0.053 H -60.6 -50.1 9.0 0.053 0.0 HOH
 6.025
 O
 O
LEU B:49 B:49 13.0 0.076 H -59.8 -42.8 13.0 0.076 0.0 HOH
 5.797
 C
 O
2idj 1 P13255 92.15 0.0 X-RAY
 2006-12-19 LEU A:49 A:49 30.0 0.176 H -56.9 -49.1 30.0 0.176 0.0 HOH
 6.545
 C
 O
LEU B:49 B:49 35.0 0.206 H -65.9 -39.6 35.0 0.206 0.0 HOH
 4.078
 CB
 O
LEU C:49 C:49 16.0 0.094 H -54.9 -46.2 16.0 0.094 0.0 HOH
 9.905
 CD2
 O
LEU D:49 D:49 18.0 0.106 H -66.5 -41.5 18.0 0.106 0.0 HOH
 5.392
 C
 O
2idk 1 P13255 92.15 0.0 X-RAY
 2006-12-19 LEU A:49 A:49 22.0 0.129 H -63.5 -41.5 22.0 0.129 0.0 HOH
 8.652
 N
 O
LEU B:49 B:49 22.0 0.129 H -62.4 -39.7 22.0 0.129 0.0
LEU C:49 C:49 14.0 0.082 H -65.4 -42.1 14.0 0.082 0.0
LEU D:49 D:49 21.0 0.124 H -62.5 -40.5 21.0 0.124 0.0
3thr 1 P13255 92.15 0.0 X-RAY
 2011-11-16 LEU A:50 A:49 30.0 0.176 H -53.1 -48.4 30.0 0.176 0.0 HOH
 3.559
 CD1
 O
LEU B:50 B:49 11.0 0.065 H -65.2 -47.3 11.0 0.065 0.0 HOH
 4.292
 CD1
 O
LEU C:50 C:49 13.0 0.076 H -58.8 -38.3 13.0 0.076 0.0 HOH
 3.945
 CD1
 O
LEU D:50 D:49 15.0 0.088 H -57.5 -44.4 15.0 0.088 0.0 HOH
 4.153
 C
 O
3ths 1 P13255 92.15 0.0 X-RAY
 2011-11-16 LEU A:50 A:49 20.0 0.118 H -60.9 -49.4 20.0 0.118 0.0 HOH
 6.652
 CD1
 O
LEU B:50 B:49 15.0 0.088 H -50.9 -50.6 15.0 0.088 0.0 HOH
 5.827
 C
 O
LEU C:50 C:49 15.0 0.088 H -51.6 -52.0 15.0 0.088 0.0
LEU D:50 D:49 18.0 0.106 H -65.6 -47.8 18.0 0.106 0.0 HOH
 5.852
 C
 O
1d2g 1 P13255 91.81 0.0 X-RAY
 1999-10-25 LEU A:49 A:49 8.0 0.047 H -63.9 -45.7 8.0 0.047 0.0 HOH
 4.036
 CB
 O
LEU B:49 B:49 10.0 0.059 H -63.2 -34.9 10.0 0.059 0.0 HOH
 6.162
 O
 O
1d2h 1 P13255 91.81 0.0 X-RAY
 1999-10-25 LEU A:49 A:49 6.0 0.035 H -43.6 -55.7 6.0 0.035 0.0 HOH
 7.459
 CD2
 O
LEU B:49 B:49 5.0 0.029 H -32.8 -68.2 5.0 0.029 0.0 HOH
 5.364
 O
 O
LEU C:49 C:49 7.0 0.041 H -62.0 -37.2 7.0 0.041 0.0 HOH
 5.179
 CD2
 O
LEU D:49 D:49 13.0 0.076 H -28.9 -57.0 13.0 0.076 0.0 HOH
 7.497
 CD2
 O
1nbi 1 P13255 91.81 0.0 X-RAY
 2003-03-04 LEU A:49 A:49 8.0 0.047 H -56.2 -31.5 8.0 0.047 0.0 HOH
 7.043
 C
 O
LEU B:49 B:49 7.0 0.041 H -52.9 -35.5 7.0 0.041 0.0 HOH
 6.086
 CD2
 O
LEU C:49 C:49 5.0 0.029 H -45.3 -38.0 5.0 0.029 0.0 HOH
 4.807
 C
 O
LEU D:49 D:49 4.0 0.024 H -46.9 -37.9 4.0 0.024 0.0 HOH
 5.129
 O
 O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 LEU A:49 A:49 11.0 0.065 H -51.9 -35.2 11.0 0.065 0.0
LEU B:49 B:49 12.0 0.071 H -48.3 -34.7 12.0 0.071 0.0 HOH
 6.739
 O
 O
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 LEU A:49 A:49 14.0 0.082 H -64.5 -34.6 14.0 0.082 0.0
LEU B:49 B:49 19.0 0.112 H -59.6 -35.7 19.0 0.112 0.0 BME
 9.921
 O
 S2
LEU C:49 C:49 12.0 0.071 H -62.6 -40.5 12.0 0.071 0.0
LEU D:49 D:49 13.0 0.076 H -64.6 -35.4 13.0 0.076 0.0 HOH
 6.886
 CD2
 O
LEU E:49 E:49 10.0 0.059 H -66.1 -35.7 NA NA NA
LEU F:49 F:49 11.0 0.065 H -64.8 -34.3 NA NA NA
LEU G:49 G:49 10.0 0.059 H -62.5 -33.6 NA NA NA
LEU H:49 H:49 20.0 0.118 H -63.4 -38.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 LEU A:50 A:50 9.0 0.053 H -62.7 -40.4