Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42929987 . G A CCDS4876.1:NM_018960.4:c.244Gtg>Atg_NP_061833.1:p.82V>M Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
 2006-09-26 VAL A:82 A:81 6.0 0.039 E -106.7 130.0 6.0 0.039 0.0
VAL B:82 B:81 4.0 0.026 E -106.9 132.7 4.0 0.026 0.0 CL
HOH
 9.155
3.315
 CG1
C
 CL
O
1r74 1 Q14749 100.0 0.0 X-RAY
 2004-09-21 VAL A:81 A:81 6.0 0.039 E -108.5 133.0 6.0 0.039 0.0
VAL B:81 B:81 4.0 0.026 E -109.2 138.7 4.0 0.026 0.0 HOH
 6.704
 O
 O
1bhj 1 P13255 92.15 0.0 X-RAY
 1999-01-06 VAL A:81 A:81 8.0 0.052 -88.2 139.3 8.0 0.052 0.0 HOH
 7.440
 CG1
 O
VAL B:81 B:81 6.0 0.039 E -89.1 126.8 6.0 0.039 0.0 HOH
 4.157
 N
 O
1d2c 1 P13255 92.15 0.0 X-RAY
 1999-10-06 VAL A:81 A:81 5.0 0.032 E -113.8 128.9 5.0 0.032 0.0 HOH
 2.650
 N
 O
VAL B:81 B:81 4.0 0.026 E -101.2 136.6 4.0 0.026 0.0 HOH
 7.581
 O
 O
1kia 1 P13255 92.15 0.0 X-RAY
 2003-06-10 VAL A:81 A:81 3.0 0.019 E -111.9 145.4 3.0 0.019 0.0 HOH
 4.103
 O
 O
VAL B:81 B:81 3.0 0.019 E -108.3 145.5 3.0 0.019 0.0 HOH
 3.640
 N
 O
VAL C:81 C:81 3.0 0.019 E -108.4 146.6 3.0 0.019 0.0 HOH
 4.573
 N
 O
VAL D:81 D:81 4.0 0.026 E -109.4 146.1 4.0 0.026 0.0 HOH
 4.955
 N
 O
1nbh 1 P13255 92.15 0.0 X-RAY
 2003-03-04 VAL A:81 A:81 3.0 0.019 E -109.4 146.3 3.0 0.019 0.0 HOH
 4.026
 O
 O
VAL B:81 B:81 3.0 0.019 E -107.4 147.6 3.0 0.019 0.0 HOH
 5.064
 N
 O
VAL C:81 C:81 3.0 0.019 E -107.0 146.5 3.0 0.019 0.0 HOH
 3.871
 N
 O
VAL D:81 D:81 3.0 0.019 E -108.5 147.8 3.0 0.019 0.0 HOH
 4.704
 N
 O
1xva 1 P13255 92.15 0.0 X-RAY
 1997-01-27 VAL A:81 A:81 6.0 0.039 E -119.5 135.0 6.0 0.039 0.0 HOH
 4.081
 O
 O
VAL B:81 B:81 5.0 0.032 E -112.9 134.5 5.0 0.032 0.0 HOH
 3.220
 N
 O
2idj 1 P13255 92.15 0.0 X-RAY
 2006-12-19 VAL A:81 A:81 5.0 0.032 E -88.7 135.4 5.0 0.032 0.0 HOH
 2.890
 N
 O
VAL B:81 B:81 4.0 0.026 E -112.1 136.0 4.0 0.026 0.0 HOH
 2.690
 N
 O
VAL C:81 C:81 4.0 0.026 E -104.5 137.7 4.0 0.026 0.0 HOH
 2.763
 N
 O
VAL D:81 D:81 3.0 0.019 E -111.8 137.0 3.0 0.019 0.0 HOH
 5.537
 CG2
 O
2idk 1 P13255 92.15 0.0 X-RAY
 2006-12-19 VAL A:81 A:81 2.0 0.013 E -91.2 136.5 2.0 0.013 0.0
VAL B:81 B:81 4.0 0.026 E -112.5 127.0 4.0 0.026 0.0 HOH
 5.707
 N
 O
VAL C:81 C:81 3.0 0.019 E -91.7 138.1 3.0 0.019 0.0
VAL D:81 D:81 4.0 0.026 E -112.4 127.5 4.0 0.026 0.0
3thr 1 P13255 92.15 0.0 X-RAY
 2011-11-16 VAL A:82 A:81 3.0 0.019 E -118.6 129.6 3.0 0.019 0.0 HOH
 2.876
 N
 O
VAL B:82 B:81 5.0 0.032 E -104.6 137.1 5.0 0.032 0.0 HOH
 3.557
 C
 O
VAL C:82 C:81 2.0 0.013 E -115.9 133.0 2.0 0.013 0.0 C2F
HOH
 6.762
2.761
 C
N
 C11
O
VAL D:82 D:81 3.0 0.019 E -109.3 133.2 3.0 0.019 0.0 HOH
 2.578
 N
 O
3ths 1 P13255 92.15 0.0 X-RAY
 2011-11-16 VAL A:82 A:81 6.0 0.039 E -115.2 133.3 6.0 0.039 0.0 HOH
 4.983
 CG2
 O
VAL B:82 B:81 3.0 0.019 E -120.7 131.5 3.0 0.019 0.0 HOH
 3.333
 C
 O
VAL C:82 C:81 4.0 0.026 E -120.4 126.8 4.0 0.026 0.0 HOH
 7.298
 CG1
 O
VAL D:82 D:81 6.0 0.039 E -110.4 131.9 6.0 0.039 0.0 HOH
 7.139
 CG1
 O
1d2g 1 P13255 91.81 0.0 X-RAY
 1999-10-25 VAL A:81 A:81 7.0 0.045 E -124.4 144.7 7.0 0.045 0.0 HOH
 2.953
 O
 O
VAL B:81 B:81 4.0 0.026 E -116.6 145.0 4.0 0.026 0.0 HOH
 3.100
 O
 O
1d2h 1 P13255 91.81 0.0 X-RAY
 1999-10-25 VAL A:81 A:81 6.0 0.039 E -92.4 117.2 6.0 0.039 0.0 HOH
 3.189
 N
 O
VAL B:81 B:81 6.0 0.039 E -98.3 124.4 6.0 0.039 0.0 HOH
 4.704
 O
 O
VAL C:81 C:81 6.0 0.039 E -126.2 133.3 6.0 0.039 0.0 HOH
 4.886
 O
 O
VAL D:81 D:81 10.0 0.065 E -88.6 130.8 10.0 0.065 0.0 HOH
 5.399
 O
 O
1nbi 1 P13255 91.81 0.0 X-RAY
 2003-03-04 VAL A:81 A:81 7.0 0.045 E -106.4 130.5 7.0 0.045 0.0 HOH
 4.465
 O
 O
VAL B:81 B:81 6.0 0.039 E -105.2 128.3 6.0 0.039 0.0 HOH
 4.619
 O
 O
VAL C:81 C:81 7.0 0.045 E -112.8 136.8 7.0 0.045 0.0 HOH
 6.303
 C
 O
VAL D:81 D:81 7.0 0.045 E -115.9 134.7 7.0 0.045 0.0 HOH
 9.673
 CG2
 O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 VAL A:81 A:81 10.0 0.065 E -116.4 130.8 10.0 0.065 0.0 TRS
 9.634
 CG2
 O2
VAL B:81 B:81 8.0 0.052 E -118.2 128.5 8.0 0.052 0.0 TRS
HOH
 9.738
8.874
 CG2
CG1
 O2
O
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 VAL A:81 A:81 5.0 0.032 E -126.5 130.8 5.0 0.032 0.0
VAL B:81 B:81 4.0 0.026 E -129.5 131.2 4.0 0.026 0.0
VAL C:81 C:81 5.0 0.032 E -126.1 128.8 5.0 0.032 0.0
VAL D:81 D:81 5.0 0.032 E -128.1 129.4 5.0 0.032 0.0 HOH
 7.982
 CG2
 O
VAL E:81 E:81 5.0 0.032 E -125.7 130.3 NA NA NA
VAL F:81 F:81 4.0 0.026 E -129.2 128.3 NA NA NA
VAL G:81 G:81 5.0 0.032 E -129.1 131.8 NA NA NA
VAL H:81 H:81 4.0 0.026 E -123.9 133.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 VAL A:82 A:82 3.0 0.019 E -98.9 133.4