Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42930032 . A C CCDS4876.1:NM_018960.4:c.289Aag>Cag_NP_061833.1:p.97K>Q Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
 2006-09-26 LYS A:97 A:96 123.0 0.615 H -49.8 -56.6 68.0 0.34 0.275 B:Q14749:0.275
 HOH
 4.489
 NZ
 O
LYS B:97 B:96 122.0 0.61 H -45.9 -61.3 72.0 0.36 0.25 A:Q14749:0.25
 HOH
 2.664
 NZ
 O
1r74 1 Q14749 100.0 0.0 X-RAY
 2004-09-21 LYS A:96 A:96 113.0 0.565 H -51.2 -54.1 79.0 0.395 0.17 B:Q14749:0.17
 HOH
 9.942
 O
 O
LYS B:96 B:96 107.0 0.535 H -55.0 -53.0 75.0 0.375 0.16 A:Q14749:0.16
1bhj 1 P13255 92.15 0.0 X-RAY
 1999-01-06 LYS A:96 A:96 129.0 0.645 H -76.3 -29.9 129.0 0.645 0.0 HOH
 3.852
 CB
 O
LYS B:96 B:96 141.0 0.705 H -58.1 -52.4 105.0 0.525 0.18 A:P13255:0.18
 HOH
 4.046
 N
 O
1d2c 1 P13255 92.15 0.0 X-RAY
 1999-10-06 LYS A:96 A:96 99.0 0.495 H -50.5 -50.2 79.0 0.395 0.1 B:P13255:0.1
 HOH
 2.767
 CE
 O
LYS B:96 B:96 96.0 0.48 H -62.8 -45.4 71.0 0.355 0.125 A:P13255:0.125
 HOH
 2.947
 CE
 O
1kia 1 P13255 92.15 0.0 X-RAY
 2003-06-10 LYS A:96 A:96 115.0 0.575 H -54.7 -41.8 76.0 0.38 0.195 D:P13255:0.195
 HOH
 3.444
 NZ
 O
LYS B:96 B:96 117.0 0.585 H -55.8 -42.9 80.0 0.4 0.185 C:P13255:0.185
 HOH
 3.032
 N
 O
LYS C:96 C:96 119.0 0.595 H -57.5 -44.1 81.0 0.405 0.19 B:P13255:0.19
 HOH
 2.742
 NZ
 O
LYS D:96 D:96 118.0 0.59 H -56.6 -41.9 73.0 0.365 0.225 A:P13255:0.225
 HOH
 4.745
 CE
 O
1nbh 1 P13255 92.15 0.0 X-RAY
 2003-03-04 LYS A:96 A:96 112.0 0.56 H -48.4 -42.9 76.0 0.38 0.18 B:P13255:0.18
 HOH
 3.476
 O
 O
LYS B:96 B:96 114.0 0.57 H -51.9 -43.1 67.0 0.335 0.235 A:P13255:0.235
 HOH
 2.837
 NZ
 O
LYS C:96 C:96 113.0 0.565 H -48.8 -41.9 76.0 0.38 0.185 D:P13255:0.185
 HOH
 3.445
 NZ
 O
LYS D:96 D:96 112.0 0.56 H -52.4 -43.5 73.0 0.365 0.195 C:P13255:0.195
 HOH
 7.164
 CE
 O
1xva 1 P13255 92.15 0.0 X-RAY
 1997-01-27 LYS A:96 A:96 115.0 0.575 H -59.6 -42.2 88.0 0.44 0.135 B:P13255:0.135
 HOH
 3.357
 CA
 O
LYS B:96 B:96 97.0 0.485 H -65.7 -42.6 69.0 0.345 0.14 A:P13255:0.14
 HOH
 2.957
 NZ
 O
2idj 1 P13255 92.15 0.0 X-RAY
 2006-12-19 LYS A:96 A:96 115.0 0.575 H -71.0 -34.6 71.0 0.355 0.22 B:P13255:0.22
 HOH
 5.031
 N
 O
LYS B:96 B:96 113.0 0.565 H -55.7 -50.3 79.0 0.395 0.17 A:P13255:0.17
 HOH
 3.418
 N
 O
LYS C:96 C:96 116.0 0.58 H -68.4 -35.4 68.0 0.34 0.24 D:P13255:0.24
 HOH
 3.513
 N
 O
LYS D:96 D:96 109.0 0.545 H -59.6 -48.1 77.0 0.385 0.16 C:P13255:0.16
 HOH
 3.450
 N
 O
2idk 1 P13255 92.15 0.0 X-RAY
 2006-12-19 LYS A:96 A:96 111.0 0.555 H -57.0 -36.7 72.0 0.36 0.195 B:P13255:0.195
LYS B:96 B:96 120.0 0.6 H -57.4 -39.2 103.0 0.515 0.085 A:P13255:0.085
LYS C:96 C:96 111.0 0.555 H -56.7 -38.6 73.0 0.365 0.19 D:P13255:0.19
 HOH
 4.946
 N
 O
LYS D:96 D:96 123.0 0.615 H -58.9 -39.2 104.0 0.52 0.095 C:P13255:0.095
 HOH
 7.667
 CA
 O
3thr 1 P13255 92.15 0.0 X-RAY
 2011-11-16 LYS A:97 A:96 102.0 0.51 H -62.4 -39.4 86.0 0.43 0.08 B:P13255:0.08
 HOH
 3.543
 CA
 O
LYS B:97 B:96 113.0 0.565 H -56.4 -44.4 85.0 0.425 0.14 A:P13255:0.14
 HOH
 3.135
 O
 O
LYS C:97 C:96 114.0 0.57 H -63.0 -42.9 92.0 0.46 0.11 D:P13255:0.11
 HOH
 2.782
 CG
 O
LYS D:97 D:96 111.0 0.555 H -63.2 -41.9 98.0 0.49 0.065 C:P13255:0.065
 HOH
 2.733
 CD
 O
3ths 1 P13255 92.15 0.0 X-RAY
 2011-11-16 LYS A:97 A:96 114.0 0.57 H -58.2 -51.5 82.0 0.41 0.16 B:P13255:0.16
 HOH
 5.986
 CE
 O
LYS B:97 B:96 102.0 0.51 H -61.6 -40.1 94.0 0.47 0.04 A:P13255:0.04
 HOH
 4.685
 N
 O
LYS C:97 C:96 101.0 0.505 H -61.7 -40.9 93.0 0.465 0.04 D:P13255:0.04
 HOH
 9.391
 N
 O
LYS D:97 D:96 115.0 0.575 H -58.0 -51.1 83.0 0.415 0.16 C:P13255:0.16
 HOH
 5.842
 CE
 O
1d2g 1 P13255 91.81 0.0 X-RAY
 1999-10-25 LYS A:96 A:96 114.0 0.57 H -62.7 -40.2 68.0 0.34 0.23 B:P13255:0.23
 HOH
 2.785
 NZ
 O
LYS B:96 B:96 114.0 0.57 H -60.7 -44.1 75.0 0.375 0.195 A:P13255:0.195
 HOH
 3.683
 O
 O
1d2h 1 P13255 91.81 0.0 X-RAY
 1999-10-25 LYS A:96 A:96 108.0 0.54 H -51.8 -51.7 92.0 0.46 0.08 C:P13255:0.08
 HOH
 3.797
 CB
 O
LYS B:96 B:96 112.0 0.56 H -58.6 -71.1 107.0 0.535 0.025 D:P13255:0.025
 HOH
 4.438
 CD
 O
LYS C:96 C:96 115.0 0.575 H -64.2 -53.5 104.0 0.52 0.055 A:P13255:0.055
 HOH
 3.943
 CD
 O
LYS D:96 D:96 99.0 0.495 H -50.9 -58.7 55.0 0.275 0.22 B:P13255:0.22
 HOH
 3.585
 NZ
 O
1nbi 1 P13255 91.81 0.0 X-RAY
 2003-03-04 LYS A:96 A:96 120.0 0.6 H -57.1 -41.7 77.0 0.385 0.215 B:P13255:0.215
 HOH
 3.729
 CG
 O
LYS B:96 B:96 120.0 0.6 H -49.2 -45.8 90.0 0.45 0.15 A:P13255:0.15
 HOH
 2.557
 NZ
 O
LYS C:96 C:96 107.0 0.535 H -42.2 -55.8 80.0 0.4 0.135 D:P13255:0.135
 HOH
 2.776
 NZ
 O
LYS D:96 D:96 110.0 0.55 H -44.8 -56.3 84.0 0.42 0.13 C:P13255:0.13
 HOH
 4.109
 CA
 O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 LYS A:96 A:96 110.0 0.55 H -57.9 -66.3 88.0 0.44 0.11 B:Q9QXF8:0.11
 HOH
 4.319
 NZ
 O
LYS B:96 B:96 118.0 0.59 H -57.7 -65.8 92.0 0.46 0.13 A:Q9QXF8:0.13
 HOH
 3.447
 NZ
 O
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 LYS A:96 A:96 112.0 0.56 H -69.6 -37.0 80.0 0.4 0.16 B:Q9QXF8:0.16
LYS B:96 B:96 113.0 0.565 H -63.3 -37.4 86.0 0.43 0.135 A:Q9QXF8:0.135
LYS C:96 C:96 111.0 0.555 H -66.2 -34.3 84.0 0.42 0.135 D:Q9QXF8:0.135
LYS D:96 D:96 115.0 0.575 H -68.2 -36.3 94.0 0.47 0.105 C:Q9QXF8:0.105
LYS E:96 E:96 111.0 0.555 H -66.6 -35.1 NA NA NA
LYS F:96 F:96 112.0 0.56 H -62.5 -36.6 NA NA NA
LYS G:96 G:96 114.0 0.57 H -62.6 -40.6 NA NA NA
LYS H:96 H:96 113.0 0.565 H -60.3 -37.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 LYS A:97 A:97 133.0 0.665 H -62.4 -43.5