Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42930044 . A C CCDS4876.1:NM_018960.4:c.301Aac>Cac_NP_061833.1:p.101N>H Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
 2006-09-26 ASN A:101 A:100 102.0 0.637 H -60.7 -39.5 102.0 0.637 0.0
ASN B:101 B:100 101.0 0.631 H -59.6 -37.7 100.0 0.625 0.006 A:Q14749:0.006
 HOH
 9.173
 OD1
 O
1r74 1 Q14749 100.0 0.0 X-RAY
 2004-09-21 ASN A:100 A:100 113.0 0.706 H -64.3 -39.6 113.0 0.706 0.0 HOH
 8.489
 OD1
 O
ASN B:100 B:100 113.0 0.706 H -60.7 -44.4 113.0 0.706 0.0
1bhj 1 P13255 92.15 0.0 X-RAY
 1999-01-06 ASN A:100 A:100 111.0 0.694 H -47.4 -43.5 111.0 0.694 0.0 HOH
 5.926
 ND2
 O
ASN B:100 B:100 100.0 0.625 H -49.7 -53.1 100.0 0.625 0.0 HOH
 6.708
 OD1
 O
1d2c 1 P13255 92.15 0.0 X-RAY
 1999-10-06 ASN A:100 A:100 114.0 0.713 H -54.6 -22.4 114.0 0.713 0.0 HOH
 3.997
 CB
 O
ASN B:100 B:100 103.0 0.644 H -62.8 -52.4 103.0 0.644 0.0 HOH
 3.188
 ND2
 O
1kia 1 P13255 92.15 0.0 X-RAY
 2003-06-10 ASN A:100 A:100 109.0 0.681 H -57.3 -34.0 109.0 0.681 0.0 HOH
 2.934
 OD1
 O
ASN B:100 B:100 109.0 0.681 H -55.6 -36.2 109.0 0.681 0.0 HOH
 3.401
 OD1
 O
ASN C:100 C:100 111.0 0.694 H -57.5 -33.8 111.0 0.694 0.0 HOH
 8.793
 OD1
 O
ASN D:100 D:100 111.0 0.694 H -58.5 -32.8 111.0 0.694 0.0 HOH
 4.109
 OD1
 O
1nbh 1 P13255 92.15 0.0 X-RAY
 2003-03-04 ASN A:100 A:100 110.0 0.688 H -56.7 -38.8 110.0 0.688 0.0 HOH
 3.044
 OD1
 O
ASN B:100 B:100 110.0 0.688 H -59.2 -37.2 110.0 0.688 0.0 HOH
 6.863
 OD1
 O
ASN C:100 C:100 105.0 0.656 H -56.6 -40.2 105.0 0.656 0.0 HOH
 5.639
 OD1
 O
ASN D:100 D:100 109.0 0.681 H -57.9 -37.9 109.0 0.681 0.0 HOH
 6.607
 OD1
 O
1xva 1 P13255 92.15 0.0 X-RAY
 1997-01-27 ASN A:100 A:100 112.0 0.7 H -68.1 -27.1 112.0 0.7 0.0 HOH
 6.437
 N
 O
ASN B:100 B:100 109.0 0.681 H -59.6 -39.6 109.0 0.681 0.0 HOH
 5.525
 ND2
 O
2idj 1 P13255 92.15 0.0 X-RAY
 2006-12-19 ASN A:100 A:100 101.0 0.631 H -67.6 -36.1 101.0 0.631 0.0 HOH
 5.621
 OD1
 O
ASN B:100 B:100 92.0 0.575 H -67.4 -23.8 92.0 0.575 0.0 HOH
 2.818
 O
 O
ASN C:100 C:100 111.0 0.694 H -68.7 -22.7 110.0 0.688 0.006 D:P13255:0.006
 HOH
 6.172
 N
 O
ASN D:100 D:100 98.0 0.613 H -66.7 -27.5 98.0 0.613 0.0 HOH
 2.729
 O
 O
2idk 1 P13255 92.15 0.0 X-RAY
 2006-12-19 ASN A:100 A:100 107.0 0.669 H -59.4 -36.0 107.0 0.669 0.0
ASN B:100 B:100 93.0 0.581 H -61.4 -31.1 93.0 0.581 0.0
ASN C:100 C:100 105.0 0.656 H -57.7 -35.2 104.0 0.65 0.006 D:P13255:0.006
 HOH
 6.498
 N
 O
ASN D:100 D:100 95.0 0.594 H -60.9 -31.6 95.0 0.594 0.0 HOH
 8.137
 N
 O
3thr 1 P13255 92.15 0.0 X-RAY
 2011-11-16 ASN A:101 A:100 100.0 0.625 H -57.3 -39.9 97.0 0.606 0.019 B:P13255:0.019
 HOH
 6.164
 OD1
 O
ASN B:101 B:100 101.0 0.631 H -54.0 -29.3 93.0 0.581 0.05 A:P13255:0.05
 HOH
 2.628
 ND2
 O
ASN C:101 C:100 105.0 0.656 H -54.4 -34.4 101.0 0.631 0.025 D:P13255:0.025
 HOH
 2.666
 ND2
 O
ASN D:101 D:100 101.0 0.631 H -59.5 -33.9 95.0 0.594 0.037 C:P13255:0.037
 C2F
HOH
 8.846
2.347
 ND2
ND2
 OE1
O
3ths 1 P13255 92.15 0.0 X-RAY
 2011-11-16 ASN A:101 A:100 111.0 0.694 H -60.2 -28.6 107.0 0.669 0.025 B:P13255:0.025
 HOH
 8.132
 N
 O
ASN B:101 B:100 110.0 0.688 H -54.2 -30.3 110.0 0.688 0.0 HOH
 3.961
 OD1
 O
ASN C:101 C:100 106.0 0.662 H -60.2 -26.4 106.0 0.662 0.0
ASN D:101 D:100 108.0 0.675 H -55.5 -31.1 105.0 0.656 0.019 C:P13255:0.019
1d2g 1 P13255 91.81 0.0 X-RAY
 1999-10-25 ASN A:100 A:100 110.0 0.688 H -64.2 -26.0 110.0 0.688 0.0 HOH
 2.676
 O
 O
ASN B:100 B:100 107.0 0.669 H -61.7 -46.1 107.0 0.669 0.0 HOH
 3.252
 OD1
 O
1d2h 1 P13255 91.81 0.0 X-RAY
 1999-10-25 ASN A:100 A:100 94.0 0.588 H -48.3 -61.2 94.0 0.588 0.0 HOH
 3.943
 OD1
 O
ASN B:100 B:100 90.0 0.562 H -62.6 -63.2 90.0 0.562 0.0 HOH
 4.395
 OD1
 O
ASN C:100 C:100 110.0 0.688 H -47.6 -62.9 110.0 0.688 0.0 HOH
 2.460
 OD1
 O
ASN D:100 D:100 91.0 0.569 H -64.8 -54.6 91.0 0.569 0.0 HOH
 4.240
 OD1
 O
1nbi 1 P13255 91.81 0.0 X-RAY
 2003-03-04 ASN A:100 A:100 106.0 0.662 H -58.5 -38.4 106.0 0.662 0.0 HOH
 3.311
 OD1
 O
ASN B:100 B:100 104.0 0.65 H -57.6 -40.3 104.0 0.65 0.0 HOH
 3.325
 ND2
 O
ASN C:100 C:100 107.0 0.669 H -51.2 -51.1 107.0 0.669 0.0 HOH
 4.429
 OD1
 O
ASN D:100 D:100 105.0 0.656 H -50.3 -53.0 105.0 0.656 0.0 HOH
 5.317
 OD1
 O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 ASN A:100 A:100 99.0 0.619 H -55.8 -34.9 99.0 0.619 0.0 HOH
 8.542
 ND2
 O
ASN B:100 B:100 99.0 0.619 H -55.4 -31.0 99.0 0.619 0.0 HOH
 8.113
 ND2
 O
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 ASN A:100 A:100 104.0 0.65 H -62.5 -30.2 104.0 0.65 0.0
ASN B:100 B:100 103.0 0.644 H -62.0 -32.6 103.0 0.644 0.0
ASN C:100 C:100 106.0 0.662 H -57.2 -34.2 106.0 0.662 0.0
ASN D:100 D:100 103.0 0.644 H -62.6 -34.6 103.0 0.644 0.0
ASN E:100 E:100 105.0 0.656 H -60.0 -32.4 NA NA NA
ASN F:100 F:100 101.0 0.631 H -59.6 -33.5 NA NA NA
ASN G:100 G:100 105.0 0.656 H -60.0 -30.9 NA NA NA
ASN H:100 H:100 105.0 0.656 H -64.7 -32.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 ASN A:101 A:101 85.0 0.531 H -61.6 -37.1