Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42930051 . G A CCDS4876.1:NM_018960.4:c.308cGg>cAg_NP_061833.1:p.103R>Q Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
 2006-09-26 ARG A:103 A:102 95.0 0.422 T -56.4 -14.3 46.0 0.204 0.218 B:Q14749:0.218
ARG B:103 B:102 95.0 0.422 T -55.1 -11.4 47.0 0.209 0.213 A:Q14749:0.213
1r74 1 Q14749 100.0 0.0 X-RAY
 2004-09-21 ARG A:102 A:102 112.0 0.498 T -48.7 -21.4 58.0 0.258 0.24 B:Q14749:0.24
 HOH
 4.011
 NH2
 O
ARG B:102 B:102 117.0 0.52 T -46.6 -21.4 61.0 0.271 0.249 A:Q14749:0.249
 HOH
 8.925
 O
 O
1bhj 1 P13255 92.15 0.0 X-RAY
 1999-01-06 ARG A:102 A:102 84.0 0.373 T -58.6 -20.6 47.0 0.209 0.164 B:P13255:0.164
 HOH
 6.617
 NH2
 O
ARG B:102 B:102 82.0 0.364 G -66.3 -27.2 44.0 0.196 0.168 A:P13255:0.169
 HOH
 6.489
 NH2
 O
1d2c 1 P13255 92.15 0.0 X-RAY
 1999-10-06 ARG A:102 A:102 91.0 0.404 T -55.8 -9.3 48.0 0.213 0.191 B:P13255:0.191
 HOH
 6.644
 CB
 O
ARG B:102 B:102 82.0 0.364 G -60.6 -23.2 40.0 0.178 0.186 A:P13255:0.187
 HOH
 4.637
 NH1
 O
1kia 1 P13255 92.15 0.0 X-RAY
 2003-06-10 ARG A:102 A:102 97.0 0.431 T -54.2 -24.4 49.0 0.218 0.213 D:P13255:0.213
 HOH
 6.795
 CD
 O
ARG B:102 B:102 92.0 0.409 T -56.5 -26.5 45.0 0.2 0.209 C:P13255:0.209
 HOH
 3.651
 O
 O
ARG C:102 C:102 98.0 0.436 T -55.3 -24.9 47.0 0.209 0.227 B:P13255:0.227
 HOH
 3.313
 CG
 O
ARG D:102 D:102 94.0 0.418 T -56.3 -24.9 47.0 0.209 0.209 A:P13255:0.209
 HOH
 2.696
 NH2
 O
1nbh 1 P13255 92.15 0.0 X-RAY
 2003-03-04 ARG A:102 A:102 93.0 0.413 T -58.5 -16.5 54.0 0.24 0.173 B:P13255:0.173
 HOH
 5.820
 N
 O
ARG B:102 B:102 91.0 0.404 T -59.7 -18.0 53.0 0.236 0.168 A:P13255:0.169
 HOH
 3.328
 NH1
 O
ARG C:102 C:102 92.0 0.409 T -59.6 -18.5 54.0 0.24 0.169 D:P13255:0.169
 HOH
 6.462
 NH1
 O
ARG D:102 D:102 86.0 0.382 T -60.4 -15.8 51.0 0.227 0.155 C:P13255:0.156
 HOH
 4.508
 O
 O
1xva 1 P13255 92.15 0.0 X-RAY
 1997-01-27 ARG A:102 A:102 95.0 0.422 T -63.5 -12.0 48.0 0.213 0.209 B:P13255:0.209
 HOH
 4.042
 NH2
 O
ARG B:102 B:102 92.0 0.409 T -39.4 -43.0 45.0 0.2 0.209 A:P13255:0.209
 HOH
 6.560
 NH2
 O
2idj 1 P13255 92.15 0.0 X-RAY
 2006-12-19 ARG A:102 A:102 81.0 0.36 T -62.4 -19.4 39.0 0.173 0.187 B:P13255:0.187
 HOH
 3.908
 NH2
 O
ARG B:102 B:102 85.0 0.378 T -53.1 -32.0 41.0 0.182 0.196 A:P13255:0.196
 HOH
 3.109
 N
 O
ARG C:102 C:102 84.0 0.373 T -57.2 -28.7 41.0 0.182 0.191 D:P13255:0.191
 HOH
 6.710
 CB
 O
ARG D:102 D:102 82.0 0.364 T -53.4 -25.0 42.0 0.187 0.177 C:P13255:0.178
 HOH
 3.115
 N
 O
2idk 1 P13255 92.15 0.0 X-RAY
 2006-12-19 ARG A:102 A:102 90.0 0.4 T -72.3 -16.9 48.0 0.213 0.187 B:P13255:0.187
 HOH
 9.813
 NH1
 O
ARG B:102 B:102 88.0 0.391 T -61.3 -22.8 43.0 0.191 0.2 A:P13255:0.2
 HOH
 9.612
 O
 O
ARG C:102 C:102 93.0 0.413 T -71.3 -15.9 49.0 0.218 0.195 D:P13255:0.196
 HOH
 6.890
 CB
 O
ARG D:102 D:102 85.0 0.378 T -62.1 -22.2 42.0 0.187 0.191 C:P13255:0.191
 HOH
 7.478
 NE
 O
3thr 1 P13255 92.15 0.0 X-RAY
 2011-11-16 ARG A:103 A:102 86.0 0.382 T -53.9 -31.0 45.0 0.2 0.182 B:P13255:0.182
 HOH
 2.685
 O
 O
ARG B:103 B:102 81.0 0.36 T -67.2 -14.7 43.0 0.191 0.169 A:P13255:0.169
 HOH
 3.556
 CD
 O
ARG C:103 C:102 82.0 0.364 T -69.3 -19.8 45.0 0.2 0.164 D:P13255:0.164
 HOH
 2.758
 O
 O
ARG D:103 D:102 88.0 0.391 T -66.4 -23.9 51.0 0.227 0.164 C:P13255:0.164
 HOH
 3.181
 N
 O
3ths 1 P13255 92.15 0.0 X-RAY
 2011-11-16 ARG A:103 A:102 82.0 0.364 T -56.0 -28.6 44.0 0.196 0.168 B:P13255:0.169
 HOH
 3.430
 CD
 O
ARG B:103 B:102 96.0 0.427 T -66.6 -14.3 53.0 0.236 0.191 A:P13255:0.191
 HOH
 2.813
 O
 O
ARG C:103 C:102 96.0 0.427 T -68.7 -10.9 56.0 0.249 0.178 D:P13255:0.178
ARG D:103 D:102 85.0 0.378 T -57.2 -21.4 46.0 0.204 0.174 C:P13255:0.173
1d2g 1 P13255 91.81 0.0 X-RAY
 1999-10-25 ARG A:102 A:102 85.0 0.378 T -59.3 -7.8 46.0 0.204 0.174 B:P13255:0.173
 HOH
 2.589
 O
 O
ARG B:102 B:102 87.0 0.387 T -67.0 -10.9 48.0 0.213 0.174 A:P13255:0.173
 HOH
 3.459
 NH2
 O
1d2h 1 P13255 91.81 0.0 X-RAY
 1999-10-25 ARG A:102 A:102 95.0 0.422 G -58.3 -24.5 35.0 0.156 0.266 C:P13255:0.267
 HOH
 4.239
 O
 O
ARG B:102 B:102 104.0 0.462 T -78.2 -17.8 51.0 0.227 0.235 D:P13255:0.236
 HOH
 3.402
 NH1
 O
ARG C:102 C:102 85.0 0.378 G -57.6 -14.1 42.0 0.187 0.191 A:P13255:0.191
 HOH
 6.881
 NH2
 O
ARG D:102 D:102 82.0 0.364 T -39.9 -30.5 34.0 0.151 0.213 B:P13255:0.213
 HOH
 6.386
 O
 O
1nbi 1 P13255 91.81 0.0 X-RAY
 2003-03-04 ARG A:102 A:102 85.0 0.378 T -61.6 -20.7 36.0 0.16 0.218 B:P13255:0.218
 HOH
 2.958
 NH2
 O
ARG B:102 B:102 86.0 0.382 T -63.3 -17.4 41.0 0.182 0.2 A:P13255:0.2
 HOH
 7.224
 NH2
 O
ARG C:102 C:102 98.0 0.436 T -70.8 -8.5 38.0 0.169 0.267 D:P13255:0.267
 HOH
 4.363
 NH1
 O
ARG D:102 D:102 97.0 0.431 T -71.1 -7.6 40.0 0.178 0.253 C:P13255:0.253
 HOH
 6.862
 NH2
 O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 ARG A:102 A:102 123.0 0.547 T -61.7 -24.1 68.0 0.302 0.245 B:Q9QXF8:0.244
ARG B:102 B:102 89.0 0.396 T -56.5 -21.1 55.0 0.244 0.152 A:Q9QXF8:0.151
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 ARG A:102 A:102 98.0 0.436 T -66.6 -19.2 40.0 0.178 0.258 B:Q9QXF8:0.258
ARG B:102 B:102 87.0 0.387 T -64.1 -23.9 43.0 0.191 0.196 A:Q9QXF8:0.196
ARG C:102 C:102 95.0 0.422 T -65.9 -27.3 51.0 0.227 0.195 D:Q9QXF8:0.196
ARG D:102 D:102 86.0 0.382 T -68.4 -24.4 40.0 0.178 0.204 C:Q9QXF8:0.204
ARG E:102 E:102 89.0 0.396 T -60.8 -19.6 NA NA NA
ARG F:102 F:102 122.0 0.542 T -70.9 -25.8 NA NA NA
ARG G:102 G:102 90.0 0.4 T -65.2 -19.0 NA NA NA
ARG H:102 H:102 86.0 0.382 T -71.1 -22.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 ARG A:103 A:103 90.0 0.4 T -57.5 -16.7