Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42930062 . G A CCDS4876.1:NM_018960.4:c.319Gcc>Acc_NP_061833.1:p.107A>T Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
 2006-09-26 ALA A:107 A:106 49.0 0.426 H -62.2 -29.3 49.0 0.426 0.0
ALA B:107 B:106 39.0 0.339 H -61.6 -26.2 39.0 0.339 0.0 HOH
 9.706
 O
 O
1r74 1 Q14749 100.0 0.0 X-RAY
 2004-09-21 ALA A:106 A:106 44.0 0.383 H -60.3 -33.4 44.0 0.383 0.0
ALA B:106 B:106 42.0 0.365 H -56.1 -31.2 42.0 0.365 0.0 HOH
 7.133
 O
 O
1bhj 1 P13255 92.15 0.0 X-RAY
 1999-01-06 ALA A:106 A:106 46.0 0.4 H -57.4 -60.7 46.0 0.4 0.0 HOH
 8.745
 O
 O
ALA B:106 B:106 47.0 0.409 H -51.4 -59.8 47.0 0.409 0.0 HOH
 3.361
 O
 O
1d2c 1 P13255 92.15 0.0 X-RAY
 1999-10-06 ALA A:106 A:106 47.0 0.409 H -64.9 -46.8 47.0 0.409 0.0 HOH
 2.828
 O
 O
ALA B:106 B:106 50.0 0.435 H -59.4 -36.4 50.0 0.435 0.0
1kia 1 P13255 92.15 0.0 X-RAY
 2003-06-10 ALA A:106 A:106 37.0 0.322 H -53.1 -51.0 37.0 0.322 0.0 HOH
 5.812
 O
 O
ALA B:106 B:106 38.0 0.33 H -52.7 -52.0 38.0 0.33 0.0 HOH
 3.531
 O
 O
ALA C:106 C:106 39.0 0.339 H -52.4 -50.4 39.0 0.339 0.0 HOH
 3.255
 O
 O
ALA D:106 D:106 38.0 0.33 H -52.2 -50.8 38.0 0.33 0.0 HOH
 2.672
 O
 O
1nbh 1 P13255 92.15 0.0 X-RAY
 2003-03-04 ALA A:106 A:106 37.0 0.322 H -51.5 -55.9 37.0 0.322 0.0 HOH
 3.560
 CB
 O
ALA B:106 B:106 39.0 0.339 H -51.1 -54.9 39.0 0.339 0.0 HOH
 2.586
 O
 O
ALA C:106 C:106 38.0 0.33 H -51.7 -56.2 38.0 0.33 0.0 HOH
 3.476
 O
 O
ALA D:106 D:106 39.0 0.339 H -51.2 -54.7 39.0 0.339 0.0 HOH
 3.282
 O
 O
1xva 1 P13255 92.15 0.0 X-RAY
 1997-01-27 ALA A:106 A:106 44.0 0.383 H -70.8 -42.7 44.0 0.383 0.0 HOH
 2.672
 O
 O
ALA B:106 B:106 51.0 0.443 H -65.7 -28.0 51.0 0.443 0.0 HOH
 3.846
 O
 O
2idj 1 P13255 92.15 0.0 X-RAY
 2006-12-19 ALA A:106 A:106 44.0 0.383 H -63.0 -51.7 44.0 0.383 0.0 HOH
 4.378
 O
 O
ALA B:106 B:106 43.0 0.374 H -64.8 -32.9 43.0 0.374 0.0 HOH
 3.958
 CB
 O
ALA C:106 C:106 46.0 0.4 H -55.0 -45.4 46.0 0.4 0.0 HOH
 3.945
 CB
 O
ALA D:106 D:106 41.0 0.357 H -65.3 -41.7 41.0 0.357 0.0 HOH
 3.501
 CB
 O
2idk 1 P13255 92.15 0.0 X-RAY
 2006-12-19 ALA A:106 A:106 40.0 0.348 H -67.0 -50.1 40.0 0.348 0.0
ALA B:106 B:106 46.0 0.4 H -65.8 -35.9 46.0 0.4 0.0 HOH
 2.611
 O
 O
ALA C:106 C:106 40.0 0.348 H -66.1 -51.4 40.0 0.348 0.0
ALA D:106 D:106 46.0 0.4 H -65.5 -37.4 46.0 0.4 0.0
3thr 1 P13255 92.15 0.0 X-RAY
 2011-11-16 ALA A:107 A:106 43.0 0.374 H -63.3 -36.1 43.0 0.374 0.0 HOH
 2.671
 O
 O
ALA B:107 B:106 47.0 0.409 H -55.2 -36.2 47.0 0.409 0.0 HOH
 3.892
 CB
 O
ALA C:107 C:106 48.0 0.417 H -56.7 -43.5 48.0 0.417 0.0 HOH
 2.566
 O
 O
ALA D:107 D:106 35.0 0.304 H -62.2 -36.8 35.0 0.304 0.0 HOH
 2.753
 O
 O
3ths 1 P13255 92.15 0.0 X-RAY
 2011-11-16 ALA A:107 A:106 45.0 0.391 H -62.2 -41.7 45.0 0.391 0.0 HOH
 3.335
 N
 O
ALA B:107 B:106 37.0 0.322 H -48.8 -47.9 37.0 0.322 0.0 HOH
 3.551
 CB
 O
ALA C:107 C:106 41.0 0.357 H -49.2 -48.8 41.0 0.357 0.0
ALA D:107 D:106 50.0 0.435 H -57.9 -43.0 50.0 0.435 0.0
1d2g 1 P13255 91.81 0.0 X-RAY
 1999-10-25 ALA A:106 A:106 44.0 0.383 H -69.6 -45.4 44.0 0.383 0.0 HOH
 3.904
 O
 O
ALA B:106 B:106 49.0 0.426 H -65.5 -36.8 49.0 0.426 0.0 HOH
 2.783
 O
 O
1d2h 1 P13255 91.81 0.0 X-RAY
 1999-10-25 ALA A:106 A:106 51.0 0.443 H -57.9 -67.4 51.0 0.443 0.0 HOH
 4.313
 O
 O
ALA B:106 B:106 44.0 0.383 H -52.1 -52.7 44.0 0.383 0.0 HOH
 6.825
 N
 O
ALA C:106 C:106 44.0 0.383 H -45.2 -63.8 44.0 0.383 0.0 HOH
 3.252
 N
 O
ALA D:106 D:106 40.0 0.348 H -53.4 -73.8 40.0 0.348 0.0 HOH
 5.020
 CB
 O
1nbi 1 P13255 91.81 0.0 X-RAY
 2003-03-04 ALA A:106 A:106 36.0 0.313 H -59.4 -52.8 36.0 0.313 0.0 HOH
 7.721
 CB
 O
ALA B:106 B:106 35.0 0.304 H -58.0 -55.3 35.0 0.304 0.0 HOH
 2.830
 CB
 O
ALA C:106 C:106 39.0 0.339 H -55.3 -56.0 39.0 0.339 0.0 HOH
 5.357
 CB
 O
ALA D:106 D:106 37.0 0.322 H -56.0 -54.0 37.0 0.322 0.0 HOH
 8.157
 N
 O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 SER A:106 A:106 52.0 NA H -33.8 -36.5 52.0 NA NA
SER B:106 B:106 52.0 NA H -39.6 -42.8 52.0 NA NA
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 SER A:106 A:106 65.0 0.565 H -59.9 -34.2 65.0 0.565 0.0
SER B:106 B:106 51.0 NA H -58.3 -26.6 51.0 NA NA
SER C:106 C:106 50.0 NA H -55.6 -34.6 50.0 NA NA
SER D:106 D:106 61.0 0.53 H -46.0 -45.0 61.0 0.53 0.0
SER E:106 E:106 49.0 0.426 H -36.9 -41.6 NA NA NA
SER F:106 F:106 59.0 0.513 H -50.8 -33.2 NA NA NA
SER G:106 G:106 66.0 0.574 H -25.0 -53.5 NA NA NA
SER H:106 H:106 51.0 NA H -55.2 -29.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 ALA A:107 A:107 47.0 0.409 H -70.4 -41.8