Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42930073 . G A CCDS4876.1:NM_018960.4:c.330aaG>aaA_NP_061833.1:p.110K>K Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
 2006-09-26 LYS A:110 A:109 76.0 NA H -77.5 -17.9 76.0 NA NA
LYS B:110 B:109 147.0 0.735 T -93.1 -6.7 147.0 0.735 0.0 HOH
 6.396
 O
 O
1r74 1 Q14749 100.0 0.0 X-RAY
 2004-09-21 LYS A:109 A:109 150.0 0.75 S -86.5 -9.2 150.0 0.75 0.0
LYS B:109 B:109 155.0 0.775 T -88.8 -6.6 155.0 0.775 0.0 HOH
 3.650
 C
 O
1bhj 1 P13255 92.15 0.0 X-RAY
 1999-01-06 LYS A:109 A:109 131.0 0.655 T -76.9 2.6 131.0 0.655 0.0 HOH
 3.988
 CD
 O
LYS B:109 B:109 133.0 0.665 H -84.0 -0.7 133.0 0.665 0.0 HOH
 4.318
 C
 O
1d2c 1 P13255 92.15 0.0 X-RAY
 1999-10-06 LYS A:109 A:109 142.0 0.71 S -95.3 12.8 142.0 0.71 0.0 HOH
 2.905
 O
 O
LYS B:109 B:109 141.0 0.705 T -104.1 9.0 140.0 0.7 0.005 A:P13255:0.005
 HOH
 7.120
 O
 O
1kia 1 P13255 92.15 0.0 X-RAY
 2003-06-10 LYS A:109 A:109 137.0 0.685 T -105.0 14.8 137.0 0.685 0.0 HOH
 3.241
 O
 O
LYS B:109 B:109 135.0 0.675 T -104.6 15.8 135.0 0.675 0.0 HOH
 2.883
 O
 O
LYS C:109 C:109 136.0 0.68 T -106.8 14.1 136.0 0.68 0.0 HOH
 4.080
 C
 O
LYS D:109 D:109 137.0 0.685 T -104.8 17.2 137.0 0.685 0.0 HOH
 3.954
 CB
 O
1nbh 1 P13255 92.15 0.0 X-RAY
 2003-03-04 LYS A:109 A:109 139.0 0.695 T -74.0 17.2 139.0 0.695 0.0 HOH
 3.458
 O
 O
LYS B:109 B:109 139.0 0.695 T -90.3 23.5 139.0 0.695 0.0 HOH
 3.881
 CB
 O
LYS C:109 C:109 140.0 0.7 T -91.1 21.5 140.0 0.7 0.0 HOH
 2.825
 O
 O
LYS D:109 D:109 140.0 0.7 T -94.0 20.5 140.0 0.7 0.0 HOH
 3.903
 CD
 O
1xva 1 P13255 92.15 0.0 X-RAY
 1997-01-27 LYS A:109 A:109 137.0 0.685 T -95.3 -0.8 137.0 0.685 0.0 HOH
 3.595
 CB
 O
LYS B:109 B:109 147.0 0.735 T -102.4 4.8 144.0 0.72 0.015 A:P13255:0.015
 HOH
 2.983
 NZ
 O
2idj 1 P13255 92.15 0.0 X-RAY
 2006-12-19 LYS A:109 A:109 143.0 0.715 T -94.7 -6.9 143.0 0.715 0.0 HOH
 3.543
 O
 O
LYS B:109 B:109 154.0 0.77 T -98.9 6.4 154.0 0.77 0.0 HOH
 2.885
 O
 O
LYS C:109 C:109 143.0 0.715 T -94.0 -5.5 143.0 0.715 0.0 HOH
 3.651
 O
 O
LYS D:109 D:109 155.0 0.775 T -101.4 3.3 155.0 0.775 0.0 HOH
 5.872
 CE
 O
2idk 1 P13255 92.15 0.0 X-RAY
 2006-12-19 LYS A:109 A:109 147.0 0.735 S -102.1 12.3 147.0 0.735 0.0
LYS B:109 B:109 157.0 0.785 T -101.5 10.9 157.0 0.785 0.0 HOH
 3.270
 CB
 O
LYS C:109 C:109 145.0 0.725 S -101.6 12.5 145.0 0.725 0.0 HOH
 9.356
 N
 O
LYS D:109 D:109 157.0 0.785 T -102.0 11.6 157.0 0.785 0.0
3thr 1 P13255 92.15 0.0 X-RAY
 2011-11-16 LYS A:110 A:109 144.0 0.72 T -94.8 2.2 144.0 0.72 0.0 HOH
 2.587
 NZ
 O
LYS B:110 B:109 151.0 0.755 T -88.7 -7.2 151.0 0.755 0.0 HOH
 2.830
 O
 O
LYS C:110 C:109 147.0 0.735 T -100.3 6.2 147.0 0.735 0.0 C2F
HOH
 8.329
2.667
 O
O
 O4
O
LYS D:110 D:109 154.0 0.77 T -89.8 0.8 154.0 0.77 0.0 HOH
 3.129
 O
 O
3ths 1 P13255 92.15 0.0 X-RAY
 2011-11-16 LYS A:110 A:109 146.0 0.73 T -82.7 -9.3 146.0 0.73 0.0 HOH
 3.092
 C
 O
LYS B:110 B:109 149.0 0.745 T -93.1 2.8 149.0 0.745 0.0 HOH
 3.345
 C
 O
LYS C:110 C:109 152.0 0.76 T -91.3 -0.2 152.0 0.76 0.0
LYS D:110 D:109 75.0 NA T -99.1 6.0 75.0 NA NA
1d2g 1 P13255 91.81 0.0 X-RAY
 1999-10-25 LYS A:109 A:109 140.0 0.7 S -88.0 1.1 139.0 0.695 0.005 B:P13255:0.005
 HOH
 2.807
 O
 O
LYS B:109 B:109 135.0 0.675 S -86.0 -2.3 134.0 0.67 0.005 A:P13255:0.005
 HOH
 2.693
 O
 O
1d2h 1 P13255 91.81 0.0 X-RAY
 1999-10-25 LYS A:109 A:109 136.0 0.68 H -74.8 -41.9 134.0 0.67 0.01 C:P13255:0.01
 HOH
 4.233
 CB
 O
LYS B:109 B:109 128.0 0.64 S -106.7 57.6 125.0 0.625 0.015 D:P13255:0.015
 HOH
 3.895
 NZ
 O
LYS C:109 C:109 145.0 0.725 H -115.3 -20.0 136.0 0.68 0.045 A:P13255:0.045
 HOH
 3.713
 O
 O
LYS D:109 D:109 133.0 0.665 H -90.8 -34.3 133.0 0.665 0.0 HOH
 2.800
 NZ
 O
1nbi 1 P13255 91.81 0.0 X-RAY
 2003-03-04 LYS A:109 A:109 136.0 0.68 T -105.8 3.6 136.0 0.68 0.0 HOH
 4.309
 O
 O
LYS B:109 B:109 140.0 0.7 T -101.2 0.9 140.0 0.7 0.0 HOH
 4.050
 O
 O
LYS C:109 C:109 143.0 0.715 T -98.2 1.2 143.0 0.715 0.0 HOH
 4.136
 NZ
 O
LYS D:109 D:109 144.0 0.72 T -99.3 0.1 144.0 0.72 0.0 HOH
 4.963
 NZ
 O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 ASN A:109 A:109 134.0 0.838 T -85.7 -1.0 134.0 0.838 0.0
ASN B:109 B:109 134.0 0.838 T -73.6 -6.6 133.0 0.831 0.007 A:Q9QXF8:0.006
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 ASN A:109 A:109 117.0 0.731 T -102.9 22.8 117.0 0.731 0.0
ASN B:109 B:109 114.0 0.713 T -107.8 18.8 114.0 0.713 0.0
ASN C:109 C:109 120.0 0.75 T -104.5 22.8 120.0 0.75 0.0
ASN D:109 D:109 116.0 0.725 T -103.7 18.4 115.0 0.719 0.006 C:Q9QXF8:0.006
ASN E:109 E:109 116.0 0.725 T -101.4 17.2 NA NA NA
ASN F:109 F:109 116.0 0.725 T -102.4 19.6 NA NA NA
ASN G:109 G:109 116.0 0.725 T -99.7 21.7 NA NA NA
ASN H:109 H:109 121.0 0.756 T -100.1 22.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 LYS A:110 A:110 157.0 0.785 T -86.4 -6.8