Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42930810 . G A CCDS4876.1:NM_018960.4:c.452gGg>gAg_NP_061833.1:p.151G>E Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
 2006-09-26 GLY A:151 A:150 46.0 0.613 S 138.6 -59.4 46.0 0.613 0.0 HOH
 6.005
 O
 O
GLY B:151 B:150 43.0 0.573 S 121.2 -40.7 43.0 0.573 0.0 HOH
 9.916
 O
 O
1r74 1 Q14749 100.0 0.0 X-RAY
 2004-09-21 GLY A:150 A:150 43.0 0.573 S 132.5 -31.4 43.0 0.573 0.0
GLY B:150 B:150 39.0 0.52 S 126.6 -30.5 39.0 0.52 0.0 HOH
 4.355
 O
 O
1bhj 1 P13255 92.15 0.0 X-RAY
 1999-01-06 GLY A:148 A:148 35.0 0.467 S 93.7 -4.0 35.0 0.467 0.0 HOH
 5.719
 O
 O
GLY B:148 B:148 35.0 0.467 S 72.5 -17.8 35.0 0.467 0.0 HOH
 5.763
 CA
 O
1d2c 1 P13255 92.15 0.0 X-RAY
 1999-10-06 GLY A:148 A:148 44.0 0.587 S 97.7 -43.9 44.0 0.587 0.0 HOH
 3.861
 CA
 O
GLY B:148 B:148 46.0 0.613 S 96.0 -58.4 46.0 0.613 0.0
1kia 1 P13255 92.15 0.0 X-RAY
 2003-06-10 GLY A:148 A:148 63.0 0.84 S 93.3 -44.7 63.0 0.84 0.0 HOH
 6.881
 CA
 O
GLY B:148 B:148 65.0 0.867 S 93.1 -45.1 65.0 0.867 0.0 HOH
 3.160
 CA
 O
GLY C:148 C:148 63.0 0.84 S 92.3 -44.8 63.0 0.84 0.0 HOH
 7.064
 N
 O
GLY D:148 D:148 63.0 0.84 S 91.9 -45.2 63.0 0.84 0.0 HOH
 9.610
 N
 O
1nbh 1 P13255 92.15 0.0 X-RAY
 2003-03-04 GLY A:148 A:148 62.0 0.827 S 94.1 -43.9 62.0 0.827 0.0 HOH
 5.124
 N
 O
GLY B:148 B:148 63.0 0.84 S 91.9 -43.7 63.0 0.84 0.0 HOH
 8.722
 O
 O
GLY C:148 C:148 62.0 0.827 S 93.4 -44.1 62.0 0.827 0.0 HOH
 3.442
 CA
 O
GLY D:148 D:148 62.0 0.827 S 92.1 -43.6 62.0 0.827 0.0 HOH
 5.808
 O
 O
1xva 1 P13255 92.15 0.0 X-RAY
 1997-01-27 GLY A:148 A:148 36.0 0.48 S 78.7 -39.1 36.0 0.48 0.0 HOH
 7.674
 N
 O
GLY B:148 B:148 41.0 0.547 S 83.6 -40.1 41.0 0.547 0.0 HOH
 7.402
 N
 O
2idj 1 P13255 92.15 0.0 X-RAY
 2006-12-19 GLY A:148 A:148 39.0 0.52 S 89.8 0.2 39.0 0.52 0.0
GLY B:148 B:148 32.0 0.427 S 88.4 2.9 32.0 0.427 0.0 HOH
 7.394
 N
 O
GLY C:148 C:148 41.0 0.547 S 85.8 0.4 41.0 0.547 0.0 HOH
 7.621
 CA
 O
GLY D:148 D:148 31.0 0.413 S 93.5 -3.9 31.0 0.413 0.0
2idk 1 P13255 92.15 0.0 X-RAY
 2006-12-19 GLY A:148 A:148 53.0 0.707 S 101.0 -6.1 53.0 0.707 0.0 C2F
 8.977
 N
 OE1
GLY B:148 B:148 32.0 0.427 S 91.2 -8.6 32.0 0.427 0.0 C2F
 7.995
 N
 NA2
GLY C:148 C:148 54.0 0.72 S 101.4 -6.9 54.0 0.72 0.0 C2F
 8.151
 N
 NA2
GLY D:148 D:148 32.0 0.427 S 92.0 -9.1 32.0 0.427 0.0 C2F
 7.843
 N
 OE2
3thr 1 P13255 92.15 0.0 X-RAY
 2011-11-16 GLY A:149 A:148 48.0 0.64 S 102.5 -1.3 48.0 0.64 0.0 C2F
HOH
 6.611
4.474
 N
N
 OE1
O
GLY B:149 B:148 55.0 0.733 S 97.0 -7.4 55.0 0.733 0.0 C2F
HOH
 6.794
3.471
 N
N
 NA2
O
GLY C:149 C:148 44.0 0.587 S 113.5 -25.1 44.0 0.587 0.0 C2F
HOH
 6.372
3.679
 N
N
 NA2
O
GLY D:149 D:148 56.0 0.747 S 94.9 -0.9 56.0 0.747 0.0 C2F
HOH
 6.529
2.837
 N
O
 OE1
O
3ths 1 P13255 92.15 0.0 X-RAY
 2011-11-16 GLY A:149 A:148 49.0 0.653 S 89.3 -16.2 49.0 0.653 0.0 HOH
 7.526
 N
 O
GLY B:149 B:148 46.0 0.613 S 95.5 -35.9 46.0 0.613 0.0 HOH
 7.861
 C
 O
GLY C:149 C:148 46.0 0.613 S 97.7 -33.7 46.0 0.613 0.0 HOH
 9.203
 N
 O
GLY D:149 D:148 48.0 0.64 S 90.4 -12.6 48.0 0.64 0.0 HOH
 4.484
 N
 O
1d2g 1 P13255 91.81 0.0 X-RAY
 1999-10-25 GLY A:148 A:148 41.0 0.547 S 96.1 -47.5 41.0 0.547 0.0 HOH
 6.016
 CA
 O
GLY B:148 B:148 44.0 0.587 S 86.3 -41.2 44.0 0.587 0.0 HOH
 3.507
 O
 O
1d2h 1 P13255 91.81 0.0 X-RAY
 1999-10-25 GLY A:148 A:148 25.0 0.333 S 86.8 -65.2 25.0 0.333 0.0 HOH
 5.253
 O
 O
GLY B:148 B:148 44.0 0.587 S 84.8 -46.0 44.0 0.587 0.0 HOH
 5.480
 CA
 O
GLY C:148 C:148 35.0 0.467 S 99.0 -45.5 35.0 0.467 0.0 HOH
 3.747
 CA
 O
GLY D:148 D:148 53.0 0.707 S 96.3 -40.4 53.0 0.707 0.0 HOH
 2.483
 O
 O
1nbi 1 P13255 91.81 0.0 X-RAY
 2003-03-04 GLY A:148 A:148 42.0 0.56 S 93.6 -46.8 42.0 0.56 0.0 HOH
 4.795
 O
 O
GLY B:148 B:148 41.0 0.547 S 93.3 -45.9 41.0 0.547 0.0 HOH
 6.561
 CA
 O
GLY C:148 C:148 38.0 0.507 S 111.9 -39.5 38.0 0.507 0.0 HOH
 4.305
 O
 O
GLY D:148 D:148 39.0 0.52 S 109.7 -39.6 39.0 0.52 0.0 HOH
 3.552
 O
 O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 GLY A:148 A:148 54.0 0.72 S 101.3 -13.6 54.0 0.72 0.0 BME
HOH
 6.944
5.304
 N
O
 O1
O
GLY B:148 B:148 50.0 0.667 S 104.0 -20.3 50.0 0.667 0.0 BME
HOH
 7.258
9.649
 N
CA
 O1
O
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 GLY A:148 A:148 48.0 0.64 S 111.9 -54.5 48.0 0.64 0.0
GLY B:148 B:148 49.0 0.653 S 149.0 -52.2 49.0 0.653 0.0
GLY C:148 C:148 55.0 0.733 S 93.8 -59.2 55.0 0.733 0.0
GLY D:148 D:148 47.0 0.627 S 116.7 -54.6 47.0 0.627 0.0
GLY E:148 E:148 51.0 0.68 S 110.5 -56.4 NA NA NA
GLY F:148 F:148 49.0 0.653 S 106.6 -53.3 NA NA NA
GLY G:148 G:148 54.0 0.72 S 95.4 -57.1 NA NA NA
GLY H:148 H:148 50.0 0.667 S 125.3 -55.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 GLY A:151 A:151 42.0 0.56 S 79.8 0.8