Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42930825 . A C CCDS4876.1:NM_018960.4:c.467cAc>cCc_NP_061833.1:p.156H>P Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
 2006-09-26 HIS A:156 A:155 0.0 0.0 H -66.1 -39.7 0.0 0.0 0.0 HOH
 9.984
 CE1
 O
HIS B:156 B:155 0.0 0.0 H -58.2 -44.2 0.0 0.0 0.0 HOH
 3.379
 NE2
 O
1r74 1 Q14749 100.0 0.0 X-RAY
 2004-09-21 HIS A:155 A:155 0.0 0.0 H -75.0 -32.5 0.0 0.0 0.0
HIS B:155 B:155 0.0 0.0 H -68.5 -37.9 0.0 0.0 0.0 HOH
 3.435
 NE2
 O
1bhj 1 P13255 92.15 0.0 X-RAY
 1999-01-06 HIS A:153 A:153 0.0 0.0 H -58.3 -45.8 0.0 0.0 0.0 HOH
 5.411
 O
 O
HIS B:153 B:153 0.0 0.0 H -66.4 -52.4 0.0 0.0 0.0 HOH
 6.032
 N
 O
1d2c 1 P13255 92.15 0.0 X-RAY
 1999-10-06 HIS A:153 A:153 0.0 0.0 H -57.1 -42.1 0.0 0.0 0.0 HOH
 5.258
 O
 O
HIS B:153 B:153 0.0 0.0 H -61.7 -50.7 0.0 0.0 0.0 HOH
 8.939
 ND1
 O
1kia 1 P13255 92.15 0.0 X-RAY
 2003-06-10 HIS A:153 A:153 0.0 0.0 H -59.0 -50.0 0.0 0.0 0.0 SAM
HOH
 9.505
6.244
 CD2
N
 N6
O
HIS B:153 B:153 0.0 0.0 H -58.3 -49.3 0.0 0.0 0.0 SAM
HOH
 9.558
5.053
 CD2
O
 N6
O
HIS C:153 C:153 0.0 0.0 H -60.5 -50.3 0.0 0.0 0.0 SAM
HOH
 9.439
5.659
 CD2
O
 N6
O
HIS D:153 D:153 0.0 0.0 H -59.3 -49.4 0.0 0.0 0.0 SAM
HOH
 9.379
7.207
 CD2
NE2
 N6
O
1nbh 1 P13255 92.15 0.0 X-RAY
 2003-03-04 HIS A:153 A:153 0.0 0.0 H -54.4 -49.0 0.0 0.0 0.0 SAM
HOH
 9.408
6.252
 CD2
C
 N6
O
HIS B:153 B:153 0.0 0.0 H -54.2 -49.1 0.0 0.0 0.0 SAM
HOH
 9.411
7.443
 CD2
NE2
 N6
O
HIS C:153 C:153 0.0 0.0 H -54.2 -47.6 0.0 0.0 0.0 SAM
HOH
 9.450
5.064
 CD2
O
 N6
O
HIS D:153 D:153 0.0 0.0 H -54.9 -49.7 0.0 0.0 0.0 SAM
HOH
 9.437
5.996
 CD2
NE2
 N6
O
1xva 1 P13255 92.15 0.0 X-RAY
 1997-01-27 HIS A:153 A:153 0.0 0.0 H -62.8 -40.7 0.0 0.0 0.0 HOH
 5.462
 O
 O
HIS B:153 B:153 0.0 0.0 H -66.8 -38.6 0.0 0.0 0.0 HOH
 5.196
 O
 O
2idj 1 P13255 92.15 0.0 X-RAY
 2006-12-19 HIS A:153 A:153 0.0 0.0 H -65.8 -40.9 0.0 0.0 0.0
HIS B:153 B:153 0.0 0.0 H -61.5 -46.4 0.0 0.0 0.0 HOH
 3.174
 NE2
 O
HIS C:153 C:153 0.0 0.0 H -59.9 -44.9 0.0 0.0 0.0 HOH
 3.135
 NE2
 O
HIS D:153 D:153 0.0 0.0 H -56.5 -51.2 0.0 0.0 0.0 HOH
 3.365
 NE2
 O
2idk 1 P13255 92.15 0.0 X-RAY
 2006-12-19 HIS A:153 A:153 0.0 0.0 H -69.7 -39.1 0.0 0.0 0.0
HIS B:153 B:153 0.0 0.0 H -61.1 -46.9 0.0 0.0 0.0 HOH
 9.104
 NE2
 O
HIS C:153 C:153 0.0 0.0 H -68.3 -39.7 0.0 0.0 0.0
HIS D:153 D:153 0.0 0.0 H -62.0 -45.8 0.0 0.0 0.0 HOH
 8.211
 CE1
 O
3thr 1 P13255 92.15 0.0 X-RAY
 2011-11-16 HIS A:154 A:153 0.0 0.0 H -59.4 -40.9 0.0 0.0 0.0 C2F
HOH
 9.563
3.165
 NE2
NE2
 OE1
O
HIS B:154 B:153 0.0 0.0 H -49.8 -54.5 0.0 0.0 0.0 HOH
 3.019
 NE2
 O
HIS C:154 C:153 0.0 0.0 H -61.6 -45.5 0.0 0.0 0.0 HOH
 3.179
 NE2
 O
HIS D:154 D:153 0.0 0.0 H -57.0 -48.0 0.0 0.0 0.0 C2F
HOH
 9.695
3.216
 NE2
NE2
 OE1
O
3ths 1 P13255 92.15 0.0 X-RAY
 2011-11-16 HIS A:154 A:153 0.0 0.0 H -61.6 -48.4 0.0 0.0 0.0 HOH
 3.319
 NE2
 O
HIS B:154 B:153 0.0 0.0 H -59.2 -45.1 0.0 0.0 0.0 HOH
 3.157
 NE2
 O
HIS C:154 C:153 0.0 0.0 H -59.3 -44.1 0.0 0.0 0.0 HOH
 3.084
 NE2
 O
HIS D:154 D:153 0.0 0.0 H -61.4 -48.8 0.0 0.0 0.0 HOH
 4.254
 N
 O
1d2g 1 P13255 91.81 0.0 X-RAY
 1999-10-25 HIS A:153 A:153 0.0 0.0 H -67.0 -40.5 0.0 0.0 0.0 HOH
 4.885
 O
 O
HIS B:153 B:153 0.0 0.0 H -59.9 -40.8 0.0 0.0 0.0 HOH
 3.835
 N
 O
1d2h 1 P13255 91.81 0.0 X-RAY
 1999-10-25 HIS A:153 A:153 0.0 0.0 H -46.2 -31.4 0.0 0.0 0.0 SAH
HOH
 9.080
3.132
 ND1
ND1
 N6
O
HIS B:153 B:153 0.0 0.0 H -70.7 -40.2 0.0 0.0 0.0 SAH
HOH
 9.181
5.975
 ND1
NE2
 N6
O
HIS C:153 C:153 0.0 0.0 H -61.0 -49.3 0.0 0.0 0.0 SAH
HOH
 9.528
7.419
 ND1
CE1
 N6
O
HIS D:153 D:153 0.0 0.0 H -74.5 -65.9 0.0 0.0 0.0 SAH
HOH
 9.548
6.650
 ND1
N
 N6
O
1nbi 1 P13255 91.81 0.0 X-RAY
 2003-03-04 HIS A:153 A:153 0.0 0.0 H -52.6 -45.7 0.0 0.0 0.0 SAM
HOH
 9.213
7.664
 CD2
NE2
 N6
O
HIS B:153 B:153 0.0 0.0 H -51.9 -44.0 0.0 0.0 0.0 SAM
HOH
 9.177
6.448
 CD2
ND1
 N6
O
HIS C:153 C:153 0.0 0.0 H -56.3 -69.4 0.0 0.0 0.0 SAM
HOH
 9.044
5.479
 O
O
 N6
O
HIS D:153 D:153 0.0 0.0 H -57.9 -69.0 0.0 0.0 0.0 SAM
HOH
 9.028
5.939
 CA
O
 N6
O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 HIS A:153 A:153 0.0 0.0 H -60.4 -39.4 0.0 0.0 0.0 BME
 8.089
 NE2
 C1
HIS B:153 B:153 0.0 0.0 H -53.7 -44.6 0.0 0.0 0.0 BME
HOH
 8.595
7.050
 NE2
C
 O1
O
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 HIS A:153 A:153 0.0 0.0 H -59.4 -48.0 0.0 0.0 0.0
HIS B:153 B:153 0.0 0.0 H -60.6 -46.5 0.0 0.0 0.0
HIS C:153 C:153 0.0 0.0 H -65.0 -47.0 0.0 0.0 0.0
HIS D:153 D:153 0.0 0.0 H -67.0 -48.3 0.0 0.0 0.0
HIS E:153 E:153 0.0 0.0 H -64.1 -50.7 NA NA NA
HIS F:153 F:153 0.0 0.0 H -63.8 -49.6 NA NA NA
HIS G:153 G:153 0.0 0.0 H -63.6 -49.4 NA NA NA
HIS H:153 H:153 0.0 0.0 H -63.9 -48.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 HIS A:156 A:156 0.0 0.0 H -58.3 -45.3