Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42930828 . G A CCDS4876.1:NM_018960.4:c.470cGg>cAg_NP_061833.1:p.157R>Q Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
 2006-09-26 ARG A:157 A:156 132.0 0.587 H -60.7 -41.8 132.0 0.587 0.0
ARG B:157 B:156 132.0 0.587 H -52.9 -44.7 132.0 0.587 0.0 HOH
 3.537
 CG
 O
1r74 1 Q14749 100.0 0.0 X-RAY
 2004-09-21 ARG A:156 A:156 130.0 0.578 H -62.7 -47.1 130.0 0.578 0.0
ARG B:156 B:156 127.0 0.564 H -59.6 -47.3 127.0 0.564 0.0 HOH
 2.516
 NE
 O
1bhj 1 P13255 92.15 0.0 X-RAY
 1999-01-06 ARG A:154 A:154 102.0 0.453 H -66.2 -39.2 102.0 0.453 0.0 HOH
 2.770
 O
 O
ARG B:154 B:154 103.0 0.458 H -58.6 -35.7 103.0 0.458 0.0 HOH
 6.723
 CD
 O
1d2c 1 P13255 92.15 0.0 X-RAY
 1999-10-06 ARG A:154 A:154 96.0 0.427 H -66.0 -48.7 96.0 0.427 0.0 HOH
 2.472
 NE
 O
ARG B:154 B:154 88.0 0.391 H -61.9 -31.6 88.0 0.391 0.0
1kia 1 P13255 92.15 0.0 X-RAY
 2003-06-10 ARG A:154 A:154 92.0 0.409 H -61.2 -44.4 92.0 0.409 0.0 HOH
 4.212
 CB
 O
ARG B:154 B:154 94.0 0.418 H -60.9 -45.8 94.0 0.418 0.0 HOH
 3.495
 O
 O
ARG C:154 C:154 92.0 0.409 H -59.8 -47.6 92.0 0.409 0.0 HOH
 3.231
 O
 O
ARG D:154 D:154 93.0 0.413 H -61.4 -45.6 93.0 0.413 0.0 HOH
 8.536
 NE
 O
1nbh 1 P13255 92.15 0.0 X-RAY
 2003-03-04 ARG A:154 A:154 93.0 0.413 H -61.8 -44.8 93.0 0.413 0.0 HOH
 3.102
 NE
 O
ARG B:154 B:154 96.0 0.427 H -61.2 -45.8 96.0 0.427 0.0 HOH
 6.315
 NH1
 O
ARG C:154 C:154 93.0 0.413 H -62.5 -45.4 93.0 0.413 0.0 HOH
 3.536
 CG
 O
ARG D:154 D:154 94.0 0.418 H -60.4 -47.4 94.0 0.418 0.0 HOH
 3.257
 NH1
 O
1xva 1 P13255 92.15 0.0 X-RAY
 1997-01-27 ARG A:154 A:154 97.0 0.431 H -60.0 -51.8 97.0 0.431 0.0 HOH
 3.137
 O
 O
ARG B:154 B:154 92.0 0.409 H -70.9 -36.5 92.0 0.409 0.0 HOH
 3.363
 CG
 O
2idj 1 P13255 92.15 0.0 X-RAY
 2006-12-19 ARG A:154 A:154 102.0 0.453 H -65.0 -45.4 102.0 0.453 0.0
ARG B:154 B:154 89.0 0.396 H -65.1 -38.8 89.0 0.396 0.0 HOH
 8.311
 N
 O
ARG C:154 C:154 104.0 0.462 H -62.7 -44.3 104.0 0.462 0.0 HOH
 8.267
 N
 O
ARG D:154 D:154 89.0 0.396 H -60.7 -38.6 89.0 0.396 0.0 HOH
 2.892
 O
 O
2idk 1 P13255 92.15 0.0 X-RAY
 2006-12-19 ARG A:154 A:154 104.0 0.462 H -63.5 -41.5 104.0 0.462 0.0
ARG B:154 B:154 87.0 0.387 H -65.7 -36.7 87.0 0.387 0.0
ARG C:154 C:154 104.0 0.462 H -63.2 -41.3 104.0 0.462 0.0
ARG D:154 D:154 84.0 0.373 H -65.9 -38.4 84.0 0.373 0.0
3thr 1 P13255 92.15 0.0 X-RAY
 2011-11-16 ARG A:155 A:154 91.0 0.404 H -66.0 -43.0 91.0 0.404 0.0 HOH
 2.577
 NE
 O
ARG B:155 B:154 98.0 0.436 H -52.7 -50.7 98.0 0.436 0.0 HOH
 2.898
 O
 O
ARG C:155 C:154 95.0 0.422 H -59.6 -44.8 95.0 0.422 0.0 HOH
 2.470
 NE
 O
ARG D:155 D:154 96.0 0.427 H -62.5 -46.8 96.0 0.427 0.0 HOH
 2.855
 O
 O
3ths 1 P13255 92.15 0.0 X-RAY
 2011-11-16 ARG A:155 A:154 94.0 0.418 H -62.0 -44.1 94.0 0.418 0.0 HOH
 2.725
 O
 O
ARG B:155 B:154 86.0 0.382 H -62.9 -42.5 86.0 0.382 0.0 HOH
 2.550
 NE
 O
ARG C:155 C:154 87.0 0.387 H -65.6 -42.7 87.0 0.387 0.0 HOH
 8.027
 N
 O
ARG D:155 D:154 96.0 0.427 H -64.6 -42.1 96.0 0.427 0.0 HOH
 6.540
 N
 O
1d2g 1 P13255 91.81 0.0 X-RAY
 1999-10-25 ARG A:154 A:154 97.0 0.431 H -69.4 -39.9 97.0 0.431 0.0 HOH
 2.885
 O
 O
ARG B:154 B:154 93.0 0.413 H -72.0 -39.2 93.0 0.413 0.0 HOH
 3.044
 NH2
 O
1d2h 1 P13255 91.81 0.0 X-RAY
 1999-10-25 ARG A:154 A:154 87.0 0.387 H -61.2 -68.9 87.0 0.387 0.0 HOH
 2.518
 NH2
 O
ARG B:154 B:154 101.0 0.449 H -61.4 -58.2 101.0 0.449 0.0 HOH
 5.595
 NH1
 O
ARG C:154 C:154 100.0 0.444 H -55.8 -42.1 100.0 0.444 0.0 HOH
 4.155
 CB
 O
ARG D:154 D:154 100.0 0.444 H -48.1 -33.6 100.0 0.444 0.0 HOH
 4.909
 O
 O
1nbi 1 P13255 91.81 0.0 X-RAY
 2003-03-04 ARG A:154 A:154 99.0 0.44 H -63.6 -50.3 99.0 0.44 0.0 HOH
 7.136
 NH2
 O
ARG B:154 B:154 102.0 0.453 H -63.5 -46.0 102.0 0.453 0.0 HOH
 3.492
 NH2
 O
ARG C:154 C:154 96.0 0.427 H -42.5 -32.0 96.0 0.427 0.0 HOH
 3.373
 CG
 O
ARG D:154 D:154 98.0 0.436 H -41.3 -31.1 98.0 0.436 0.0 HOH
 2.563
 NH2
 O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 ARG A:154 A:154 114.0 0.507 H -68.6 -44.8 114.0 0.507 0.0 HOH
 8.672
 NE
 O
ARG B:154 B:154 116.0 0.516 H -65.1 -37.5 116.0 0.516 0.0 HOH
 3.143
 CD
 O
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 ARG A:154 A:154 128.0 0.569 H -62.2 -28.4 128.0 0.569 0.0
ARG B:154 B:154 126.0 0.56 H -61.5 -31.4 126.0 0.56 0.0
ARG C:154 C:154 126.0 0.56 H -60.6 -29.6 126.0 0.56 0.0
ARG D:154 D:154 127.0 0.564 H -60.3 -31.3 127.0 0.564 0.0
ARG E:154 E:154 129.0 0.573 H -56.2 -33.4 NA NA NA
ARG F:154 F:154 124.0 0.551 H -58.8 -31.6 NA NA NA
ARG G:154 G:154 126.0 0.56 H -62.1 -28.7 NA NA NA
ARG H:154 H:154 126.0 0.56 H -60.4 -29.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 ARG A:157 A:157 112.0 0.498 H -62.8 -42.3