Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42931148 . A C CCDS4876.1:NM_018960.4:c.677cAg>cCg_NP_061833.1:p.226Q>P Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
 2006-09-26 GLN A:226 NA:NA DO NA DO DO DO NA NA NA
GLN B:226 B:225 156.0 0.867 -93.3 360.0 156.0 0.867 0.0 HOH
 3.493
 NE2
 O
1r74 1 Q14749 100.0 0.0 X-RAY
 2004-09-21 GLN A:225 NA:NA DO NA DO DO DO NA NA NA
GLN B:225 B:225 86.0 NA -105.6 360.0 86.0 NA NA HOH
 9.353
 N
 O
1bhj 1 P13255 92.15 0.0 X-RAY
 1999-01-06 GLN A:223 A:223 60.0 0.333 E -91.7 86.7 60.0 0.333 0.0 HOH
 5.935
 O
 O
GLN B:223 B:223 71.0 0.394 E -92.7 79.9 71.0 0.394 0.0 HOH
 2.881
 OE1
 O
1d2c 1 P13255 92.15 0.0 X-RAY
 1999-10-06 GLN A:223 A:223 57.0 0.317 E -95.1 94.1 57.0 0.317 0.0 HOH
 7.499
 NE2
 O
GLN B:223 B:223 62.0 0.344 E -89.9 107.1 62.0 0.344 0.0
1kia 1 P13255 92.15 0.0 X-RAY
 2003-06-10 GLN A:223 A:223 38.0 0.211 E -75.7 114.9 38.0 0.211 0.0 HOH
 9.225
 N
 O
GLN B:223 B:223 38.0 0.211 E -74.1 117.4 38.0 0.211 0.0 HOH
 3.588
 OE1
 O
GLN C:223 C:223 37.0 0.206 E -75.1 116.9 37.0 0.206 0.0 HOH
 4.388
 OE1
 O
GLN D:223 D:223 39.0 0.217 E -75.4 115.4 39.0 0.217 0.0 HOH
 6.665
 NE2
 O
1nbh 1 P13255 92.15 0.0 X-RAY
 2003-03-04 GLN A:223 A:223 44.0 0.244 E -75.8 120.5 44.0 0.244 0.0 HOH
 7.180
 NE2
 O
GLN B:223 B:223 46.0 0.256 E -74.2 122.2 46.0 0.256 0.0 HOH
 7.102
 OE1
 O
GLN C:223 C:223 45.0 0.25 E -73.1 124.0 45.0 0.25 0.0 HOH
 3.316
 OE1
 O
GLN D:223 D:223 46.0 0.256 E -74.6 121.2 46.0 0.256 0.0 HOH
 6.819
 C
 O
1xva 1 P13255 92.15 0.0 X-RAY
 1997-01-27 GLN A:223 A:223 64.0 0.356 E -80.0 112.7 64.0 0.356 0.0 HOH
 9.243
 N
 O
GLN B:223 B:223 62.0 0.344 E -73.1 107.6 62.0 0.344 0.0 HOH
 7.690
 NE2
 O
2idj 1 P13255 92.15 0.0 X-RAY
 2006-12-19 GLN A:223 A:223 104.0 NA -108.7 360.0 104.0 NA NA
GLN B:223 B:223 24.0 NA -91.6 92.8 24.0 NA NA
GLN C:223 C:223 101.0 NA -89.8 360.0 101.0 NA NA
GLN D:223 D:223 20.0 NA E -84.8 94.4 20.0 NA NA HOH
 9.720
 CA
 O
2idk 1 P13255 92.15 0.0 X-RAY
 2006-12-19 GLN A:223 A:223 125.0 NA -102.7 360.0 125.0 NA NA
GLN B:223 B:223 55.0 NA -89.8 80.2 55.0 NA NA
GLN C:223 C:223 94.0 NA -108.3 360.0 94.0 NA NA
GLN D:223 D:223 25.0 NA E -89.8 80.3 25.0 NA NA
3thr 1 P13255 92.15 0.0 X-RAY
 2011-11-16 GLN A:224 A:223 130.0 0.722 E -75.0 149.1 130.0 0.722 0.0 HOH
 8.935
 C
 O
GLN B:224 B:223 92.0 0.511 E -97.2 140.8 92.0 0.511 0.0 HOH
 3.376
 OE1
 O
GLN C:224 C:223 90.0 0.5 E -88.9 127.4 90.0 0.5 0.0 HOH
 4.437
 N
 O
GLN D:224 D:223 54.0 NA E -71.4 122.5 54.0 NA NA HOH
 3.089
 O
 O
3ths 1 P13255 92.15 0.0 X-RAY
 2011-11-16 GLN A:224 A:223 65.0 NA E -74.1 147.8 65.0 NA NA
GLN B:224 B:223 62.0 NA E -75.7 153.6 62.0 NA NA HOH
 9.693
 C
 O
GLN C:224 C:223 67.0 NA -104.3 -150.4 67.0 NA NA
GLN D:224 D:223 139.0 0.772 E -75.0 151.5 139.0 0.772 0.0
1d2g 1 P13255 91.81 0.0 X-RAY
 1999-10-25 GLN A:223 A:223 63.0 0.35 E -90.5 108.2 63.0 0.35 0.0 HOH
 2.785
 OE1
 O
GLN B:223 B:223 59.0 0.328 E -81.4 112.2 59.0 0.328 0.0 HOH
 2.936
 NE2
 O
1d2h 1 P13255 91.81 0.0 X-RAY
 1999-10-25 GLN A:223 A:223 50.0 0.278 E -81.7 126.2 50.0 0.278 0.0 HOH
 3.494
 OE1
 O
GLN B:223 B:223 61.0 0.339 E -113.0 74.1 61.0 0.339 0.0 HOH
 5.238
 NE2
 O
GLN C:223 C:223 32.0 0.178 E -122.2 145.9 32.0 0.178 0.0 HOH
 9.135
 CA
 O
GLN D:223 D:223 45.0 0.25 E -108.7 118.7 45.0 0.25 0.0 HOH
 3.915
 O
 O
1nbi 1 P13255 91.81 0.0 X-RAY
 2003-03-04 GLN A:223 A:223 65.0 0.361 -75.1 108.1 65.0 0.361 0.0 HOH
 3.474
 OE1
 O
GLN B:223 B:223 66.0 0.367 -76.8 106.1 66.0 0.367 0.0 HOH
 3.198
 OE1
 O
GLN C:223 C:223 47.0 0.261 -72.5 98.1 47.0 0.261 0.0 HOH
 7.503
 C
 O
GLN D:223 D:223 47.0 0.261 -72.1 99.0 47.0 0.261 0.0 HOH
 7.898
 O
 O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 GLN A:223 A:223 64.0 NA E -83.7 116.3 64.0 NA NA
GLN B:223 B:223 49.0 NA E -105.5 133.3 49.0 NA NA
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 GLN A:223 A:223 157.0 0.872 -76.5 360.0 157.0 0.872 0.0
GLN B:223 B:223 104.0 0.578 -94.5 115.8 104.0 0.578 0.0
GLN C:223 C:223 105.0 0.583 -83.1 135.0 105.0 0.583 0.0
GLN D:223 D:223 26.0 0.144 E -109.9 156.5 26.0 0.144 0.0
GLN E:223 E:223 115.0 0.639 E -80.9 112.0 NA NA NA
GLN F:223 F:223 29.0 NA E -128.3 139.2 NA NA NA
GLN G:223 G:223 135.0 0.75 E -71.2 142.1 NA NA NA
GLN H:223 H:223 52.0 NA -96.6 130.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 GLN A:226 A:226 47.0 0.261 E -76.3 121.3