Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42931154 . C A CCDS4876.1:NM_018960.4:c.683cCg>cAg_NP_061833.1:p.228P>Q Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
2006-09-26 PRO A:228 NA:NA DO NA DO DO DO NA NA NA
PRO B:228 NA:NA DO NA DO DO DO NA NA NA
1r74 1 Q14749 100.0 0.0 X-RAY
2004-09-21 PRO A:227 NA:NA DO NA DO DO DO NA NA NA
PRO B:227 NA:NA DO NA DO DO DO NA NA NA
1bhj 1 P13255 92.15 0.0 X-RAY
1999-01-06 PRO A:225 A:225 99.0 0.683 T -57.7 132.7 99.0 0.683 0.0 HOH
3.857
CD
O
PRO B:225 B:225 92.0 0.634 T -63.7 145.2 92.0 0.634 0.0 HOH
7.741
CG
O
1d2c 1 P13255 92.15 0.0 X-RAY
1999-10-06 PRO A:225 A:225 88.0 0.607 T -28.7 -43.8 88.0 0.607 0.0 HOH
5.697
N
O
PRO B:225 B:225 83.0 0.572 T -22.8 -59.9 83.0 0.572 0.0
1kia 1 P13255 92.15 0.0 X-RAY
2003-06-10 PRO A:225 A:225 79.0 0.545 S -43.7 116.8 79.0 0.545 0.0
PRO B:225 B:225 79.0 0.545 S -43.9 117.8 79.0 0.545 0.0 HOH
5.777
CG
O
PRO C:225 C:225 80.0 0.552 S -45.5 120.3 80.0 0.552 0.0 HOH
5.106
CD
O
PRO D:225 D:225 80.0 0.552 S -43.6 117.3 80.0 0.552 0.0 HOH
6.093
CD
O
1nbh 1 P13255 92.15 0.0 X-RAY
2003-03-04 PRO A:225 A:225 80.0 0.552 S -38.7 124.8 80.0 0.552 0.0 HOH
4.195
CB
O
PRO B:225 B:225 78.0 0.538 S -38.2 125.5 78.0 0.538 0.0 HOH
6.807
CG
O
PRO C:225 C:225 79.0 0.545 S -36.8 125.4 79.0 0.545 0.0 HOH
5.410
CG
O
PRO D:225 D:225 79.0 0.545 S -38.0 126.3 79.0 0.545 0.0 HOH
7.774
N
O
1xva 1 P13255 92.15 0.0 X-RAY
1997-01-27 PRO A:225 A:225 84.0 0.579 T -52.4 -20.2 84.0 0.579 0.0 HOH
9.575
O
O
PRO B:225 B:225 78.0 0.538 T -64.5 -40.4 78.0 0.538 0.0
2idj 1 P13255 92.15 0.0 X-RAY
2006-12-19 PRO A:225 NA:NA DO NA DO DO DO NA NA NA
PRO B:225 B:225 90.0 NA S -57.2 103.3 90.0 NA NA
PRO C:225 NA:NA DO NA DO DO DO NA NA NA
PRO D:225 D:225 88.0 NA S -58.6 105.6 88.0 NA NA
2idk 1 P13255 92.15 0.0 X-RAY
2006-12-19 PRO A:225 NA:NA DO NA DO DO DO NA NA NA
PRO B:225 B:225 107.0 NA S -60.2 106.2 107.0 NA NA
PRO C:225 NA:NA DO NA DO DO DO NA NA NA
PRO D:225 D:225 107.0 NA S -59.9 106.3 107.0 NA NA
3thr 1 P13255 92.15 0.0 X-RAY
2011-11-16 PRO A:226 A:225 144.0 0.993 -59.1 360.0 144.0 0.993 0.0 HOH
9.710
N
O
PRO B:226 B:225 119.0 0.821 -41.0 131.6 119.0 0.821 0.0 HOH
7.055
O
O
PRO C:226 NA:NA DO NA DO DO DO NA NA NA
PRO D:226 D:225 142.0 0.979 -26.3 360.0 142.0 0.979 0.0 HOH
4.742
N
O
3ths 1 P13255 92.15 0.0 X-RAY
2011-11-16 PRO A:226 NA:NA DO NA DO DO DO NA NA NA
PRO B:226 B:225 156.0 1.0 -9.5 360.0 156.0 1.0 0.0
PRO C:226 NA:NA DO NA DO DO DO NA NA NA
PRO D:226 NA:NA DO NA DO DO DO NA NA NA
1d2g 1 P13255 91.81 0.0 X-RAY
1999-10-25 PRO A:225 A:225 87.0 0.6 T -14.7 -64.1 87.0 0.6 0.0 HOH
3.571
CD
O
PRO B:225 B:225 85.0 0.586 T -18.6 -64.3 85.0 0.586 0.0 HOH
4.059
CD
O
1d2h 1 P13255 91.81 0.0 X-RAY
1999-10-25 PRO A:225 A:225 101.0 0.697 S -40.1 -18.4 101.0 0.697 0.0 HOH
3.249
CB
O
PRO B:225 B:225 87.0 0.6 S -37.7 -76.7 87.0 0.6 0.0 HOH
5.964
CD
O
PRO C:225 C:225 79.0 0.545 T -34.9 -37.0 79.0 0.545 0.0 HOH
6.920
O
O
PRO D:225 D:225 101.0 0.697 S -32.1 -37.5 101.0 0.697 0.0 HOH
4.348
CG
O
1nbi 1 P13255 91.81 0.0 X-RAY
2003-03-04 PRO A:225 A:225 93.0 0.641 S -40.2 139.2 93.0 0.641 0.0 HOH
6.085
CA
O
PRO B:225 B:225 93.0 0.641 S -39.7 138.7 93.0 0.641 0.0 HOH
9.705
N
O
PRO C:225 C:225 97.0 0.669 S -42.1 130.6 97.0 0.669 0.0 HOH
4.506
O
O
PRO D:225 D:225 99.0 0.683 S -41.6 131.0 99.0 0.683 0.0 HOH
5.557
O
O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
2004-09-21 PRO A:225 NA:NA DO NA DO DO DO NA NA NA
PRO B:225 B:225 159.0 1.0 -66.6 360.0 159.0 1.0 0.0
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
2004-09-21 PRO A:225 NA:NA DO NA DO DO DO NA NA NA
PRO B:225 NA:NA DO NA DO DO DO NA NA NA
PRO C:225 C:225 103.0 0.71 S -33.0 99.2 103.0 0.71 0.0
PRO D:225 D:225 130.0 0.897 -51.3 360.0 130.0 0.897 0.0
PRO E:225 E:225 132.0 0.91 S -23.1 -54.3 NA NA NA
PRO F:225 NA:NA DO NA DO DO DO NA NA NA
PRO G:225 NA:NA DO NA DO DO DO NA NA NA
PRO H:225 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 PRO A:228 A:228 80.0 0.552 T -58.1 133.1