Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42931339 . C A CCDS4876.1:NM_018960.4:c.783ttC>ttA_NP_061833.1:p.261F>L Homo sapiens glycine N-methyltransferase (GNMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2azt 1 Q14749 99.66 0.0 X-RAY
 2006-09-26 PHE A:261 A:260 12.0 0.057 H -101.7 -5.9 12.0 0.057 0.0
PHE B:261 B:260 11.0 0.052 T -106.7 5.0 11.0 0.052 0.0 HOH
 6.547
 N
 O
1r74 1 Q14749 100.0 0.0 X-RAY
 2004-09-21 PHE A:260 A:260 13.0 0.062 T -92.1 0.0 13.0 0.062 0.0
PHE B:260 B:260 13.0 0.062 H -91.8 3.4 13.0 0.062 0.0 BME
HOH
 6.036
6.978
 CB
N
 S2
O
1bhj 1 P13255 92.15 0.0 X-RAY
 1999-01-06 PHE A:258 A:258 9.0 0.043 T -116.5 3.1 9.0 0.043 0.0 HOH
 6.148
 N
 O
PHE B:258 B:258 11.0 0.052 T -102.0 -2.7 11.0 0.052 0.0 HOH
 2.577
 O
 O
1d2c 1 P13255 92.15 0.0 X-RAY
 1999-10-06 PHE A:258 A:258 13.0 0.062 T -93.3 8.5 13.0 0.062 0.0 HOH
 3.926
 O
 O
PHE B:258 B:258 12.0 0.057 T -93.0 0.9 12.0 0.057 0.0
1kia 1 P13255 92.15 0.0 X-RAY
 2003-06-10 PHE A:258 A:258 14.0 0.067 T -105.9 9.8 14.0 0.067 0.0 HOH
 6.343
 C
 O
PHE B:258 B:258 15.0 0.071 T -102.3 10.1 15.0 0.071 0.0 HOH
 5.734
 C
 O
PHE C:258 C:258 15.0 0.071 T -104.3 10.0 15.0 0.071 0.0 HOH
 3.019
 O
 O
PHE D:258 D:258 15.0 0.071 T -103.5 9.7 15.0 0.071 0.0 HOH
 7.317
 CD1
 O
1nbh 1 P13255 92.15 0.0 X-RAY
 2003-03-04 PHE A:258 A:258 12.0 0.057 T -99.7 6.8 12.0 0.057 0.0 HOH
 9.113
 CE1
 O
PHE B:258 B:258 13.0 0.062 T -99.4 6.5 13.0 0.062 0.0 HOH
 8.788
 CE1
 O
PHE C:258 C:258 12.0 0.057 T -97.2 7.2 12.0 0.057 0.0 HOH
 5.909
 C
 O
PHE D:258 D:258 12.0 0.057 T -98.5 7.4 12.0 0.057 0.0
1xva 1 P13255 92.15 0.0 X-RAY
 1997-01-27 PHE A:258 A:258 18.0 0.086 T -86.4 12.3 18.0 0.086 0.0 HOH
 6.053
 N
 O
PHE B:258 B:258 14.0 0.067 T -84.5 -1.8 14.0 0.067 0.0 HOH
 6.550
 N
 O
2idj 1 P13255 92.15 0.0 X-RAY
 2006-12-19 PHE A:258 A:258 22.0 0.105 T -95.4 -33.7 22.0 0.105 0.0
PHE B:258 B:258 18.0 0.086 T -109.7 -2.3 18.0 0.086 0.0 HOH
 9.823
 N
 O
PHE C:258 C:258 37.0 0.176 T -96.1 -34.0 37.0 0.176 0.0
PHE D:258 D:258 15.0 0.071 T -108.3 3.0 15.0 0.071 0.0 HOH
 5.741
 N
 O
2idk 1 P13255 92.15 0.0 X-RAY
 2006-12-19 PHE A:258 A:258 22.0 0.105 T -95.4 -24.4 22.0 0.105 0.0
PHE B:258 B:258 13.0 0.062 H -97.8 -3.9 13.0 0.062 0.0
PHE C:258 C:258 28.0 0.133 T -95.0 -24.4 28.0 0.133 0.0
PHE D:258 D:258 12.0 0.057 T -97.5 -3.0 12.0 0.057 0.0
3thr 1 P13255 92.15 0.0 X-RAY
 2011-11-16 PHE A:259 A:258 15.0 0.071 T -96.2 8.0 15.0 0.071 0.0 HOH
 4.703
 CD1
 O
PHE B:259 B:258 7.0 0.033 T -109.7 6.6 7.0 0.033 0.0 HOH
 3.457
 O
 O
PHE C:259 C:258 18.0 0.086 H -89.6 -6.7 18.0 0.086 0.0 HOH
 2.960
 O
 O
PHE D:259 D:258 16.0 0.076 T -99.8 7.8 16.0 0.076 0.0 HOH
 2.652
 O
 O
3ths 1 P13255 92.15 0.0 X-RAY
 2011-11-16 PHE A:259 A:258 11.0 0.052 T -95.1 20.1 11.0 0.052 0.0 HOH
 5.998
 N
 O
PHE B:259 B:258 17.0 0.081 T -88.7 -11.5 17.0 0.081 0.0 HOH
 9.679
 CD1
 O
PHE C:259 C:258 18.0 0.086 H -87.5 -11.9 18.0 0.086 0.0
PHE D:259 D:258 12.0 0.057 T -91.9 11.8 12.0 0.057 0.0
1d2g 1 P13255 91.81 0.0 X-RAY
 1999-10-25 PHE A:258 A:258 8.0 0.038 T -104.1 5.4 8.0 0.038 0.0 HOH
 3.795
 O
 O
PHE B:258 B:258 11.0 0.052 T -97.2 10.9 11.0 0.052 0.0 HOH
 3.649
 O
 O
1d2h 1 P13255 91.81 0.0 X-RAY
 1999-10-25 PHE A:258 A:258 12.0 0.057 T -83.2 6.6 12.0 0.057 0.0 HOH
 6.977
 C
 O
PHE B:258 B:258 9.0 0.043 T -68.1 17.5 9.0 0.043 0.0 HOH
 7.477
 O
 O
PHE C:258 C:258 18.0 0.086 H -98.6 -14.6 18.0 0.086 0.0 HOH
 7.654
 CE1
 O
PHE D:258 D:258 5.0 0.024 H -79.9 -38.3 5.0 0.024 0.0 HOH
 8.358
 O
 O
1nbi 1 P13255 91.81 0.0 X-RAY
 2003-03-04 PHE A:258 A:258 9.0 0.043 T -88.8 5.0 9.0 0.043 0.0 HOH
 3.866
 O
 O
PHE B:258 B:258 9.0 0.043 T -85.6 2.1 9.0 0.043 0.0 HOH
 4.369
 O
 O
PHE C:258 C:258 11.0 0.052 T -91.6 15.4 11.0 0.052 0.0 HOH
 6.646
 N
 O
PHE D:258 D:258 14.0 0.067 T -93.9 12.3 14.0 0.067 0.0 HOH
 6.292
 O
 O
1r8x 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 PHE A:258 A:258 35.0 0.167 T -89.9 24.3 35.0 0.167 0.0 HOH
 7.924
 N
 O
PHE B:258 B:258 17.0 0.081 T -89.2 24.7 17.0 0.081 0.0 BME
HOH
 6.667
8.228
 CB
N
 S2
O
1r8y 1 Q9QXF8 91.5 0.0 X-RAY
 2004-09-21 PHE A:258 A:258 21.0 0.1 T -94.1 -5.4 21.0 0.1 0.0 BME
 6.008
 CB
 S2
PHE B:258 B:258 19.0 0.09 T -100.2 -5.2 19.0 0.09 0.0
PHE C:258 C:258 35.0 0.167 T -94.4 -4.1 35.0 0.167 0.0
PHE D:258 D:258 12.0 0.057 T -96.7 -3.8 12.0 0.057 0.0 BME
 6.428
 CB
 S2
PHE E:258 E:258 10.0 0.048 T -94.9 -6.8 NA NA NA
PHE F:258 F:258 22.0 0.105 T -93.4 -6.8 NA NA NA
PHE G:258 G:258 1.0 0.005 T -93.9 -6.9 NA NA NA
PHE H:258 H:258 14.0 0.067 T -92.5 -4.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14749-f1 1 Q14749 100.0 0.0 PHE A:261 A:261 11.0 0.052 T -93.9 6.3