Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42974760 . A C CCDS4878.1:NM_006245.3:c.434aAg>aCg_NP_006236.1:p.145K>T Homo sapiens protein phosphatase 2 regulatory subunit B'delta (PPP2R5D), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2npp 2 Q13362 87.89 0.0 X-RAY
 2006-12-12 LYS B:69 B:59 12.0 0.06 H -66.3 -38.2 NA NA NA
LYS E:69 E:59 10.0 0.05 H -63.0 -40.3 10.0 0.05 0.0
2iae 2 Q13362 88.21 0.0 X-RAY
 2006-12-26 LYS B:40 B:69 13.0 NA H -46.5 -57.7 13.0 NA NA
LYS E:40 E:69 20.0 NA H -61.1 -53.9 NA NA NA
3fga 2 Q13362 88.83 0.0 X-RAY
 2009-09-22 LYS B:36 B:59 10.0 0.05 H -60.8 -50.0 10.0 0.05 0.0
2nyl 2 Q13362 90.93 0.0 X-RAY
 2006-12-12 LYS B:32 B:59 10.0 0.05 H -70.3 -47.7 10.0 0.05 0.0
LYS E:32 E:59 13.0 0.065 H -73.1 -46.2 NA NA NA
2nym 2 Q13362 90.93 0.0 X-RAY
 2006-12-12 LYS B:32 B:59 11.0 0.055 H -81.8 -26.5 11.0 0.055 0.0
LYS E:32 E:59 12.0 0.06 H -82.7 -27.0 NA NA NA
5jja 1 Q13362 88.64 0.0 X-RAY
 2016-07-13 LYS A:41 A:69 9.0 0.045 H -70.2 -44.2 9.0 0.045 0.0 HOH
 2.858
 NZ
 O
LYS B:41 B:69 11.0 0.055 H -57.3 -42.9 NA NA NA
6toq 2 Q13362 88.89 0.0 X-RAY
 2020-10-21 LYS B:59 AAA:69 1.0 0.005 H -57.3 -48.1 1.0 0.005 0.0 HOH
 6.331
 O
 O
2jak 1 Q13362 88.89 0.0 X-RAY
 2006-12-04 LYS A:81 A:69 6.0 0.03 H -56.5 -56.9 6.0 0.03 0.0
5k6s 1 Q13362 89.14 0.0 X-RAY
 2016-12-07 LYS A:44 A:69 18.0 0.09 H -67.6 -41.8 18.0 0.09 0.0 HOH
 6.630
 N
 O
5sw9 1 Q13362 89.14 0.0 X-RAY
 2016-11-30 LYS A:44 A:69 15.0 0.075 H -66.4 -41.0 15.0 0.075 0.0 HOH
 5.832
 N
 O
5swf 1 Q13362 89.14 0.0 X-RAY
 2016-11-30 LYS A:44 A:69 11.0 0.055 H -70.3 -39.0 11.0 0.055 0.0
6oyl 1 Q13362 89.14 0.0 X-RAY
 2020-03-25 LYS A:44 A:69 14.0 0.07 H -80.1 -38.9 14.0 0.07 0.0 HOH
 5.954
 N
 O
6vro 1 Q13362 89.14 0.0 X-RAY
 2020-03-25 LYS A:44 A:69 3.0 0.015 H -68.4 -36.5 3.0 0.015 0.0 HOH
 2.928
 NZ
 O
7ouf 2 O75475,Q13362 88.89 0.0 EM
 2021-08-18 LYS C:386 F:69 13.0 0.065 H -64.2 -43.8 13.0 0.065 0.0
LYS H:386 C:69 14.0 0.07 H -64.3 -43.8 14.0 0.07 0.0
7oug 2 O75475,Q13362 88.89 0.0 EM
 2021-08-18 LYS C:386 F:69 18.0 0.09 H -63.8 -42.9 18.0 0.09 0.0
LYS H:386 C:69 17.0 0.085 H -63.9 -42.8 17.0 0.085 0.0
7ouh 2 ? 88.89 0.0 EM
 2021-08-18 LYS C:386 F:69 10.0 0.05 H -62.5 -43.3 10.0 0.05 0.0
LYS H:386 C:69 13.0 0.065 H -62.5 -43.4 13.0 0.065 0.0
7pel 2 O75475,Q13362 88.89 0.0 EM
 2021-08-25 LYS C:386 C:69 8.0 0.04 H -61.3 -43.9 8.0 0.04 0.0
LYS H:386 F:69 7.0 0.035 H -61.2 -43.9 7.0 0.035 0.0
6voy 2 Q13362 89.21 0.0 EM
 2020-07-01 LYS E:40 E:69 44.0 0.22 H -55.2 -51.0 44.0 0.22 0.0
LYS F:40 F:69 44.0 0.22 H -55.2 -51.0 44.0 0.22 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14738-f1 1 Q14738 100.0 0.0 LYS A:145 A:145 2.0 0.01 H -64.5 -43.0
af-q13362-f1 1 Q13362 81.45 0.0 LYS A:69 A:69 6.0 0.03 H -64.8 -42.7