Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42975001 . A C CCDS4878.1:NM_006245.3:c.590gAg>gCg_NP_006236.1:p.197E>A Homo sapiens protein phosphatase 2 regulatory subunit B'delta (PPP2R5D), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2npp 2 Q13362 87.89 0.0 X-RAY
2006-12-12 GLU B:121 B:111 118.0 0.621 G -63.5 -23.3 NA NA NA
GLU E:121 E:111 117.0 0.616 G -59.7 -23.7 117.0 0.616 0.0
2iae 2 Q13362 88.21 0.0 X-RAY
2006-12-26 GLU B:92 B:121 142.0 0.747 S -54.6 47.0 92.0 0.484 0.263 G:NOR00109:0.237
C:P67775:0.095
GLU E:92 E:121 145.0 0.763 S -53.7 17.5 NA NA NA
3fga 2 Q13362 88.83 0.0 X-RAY
2009-09-22 GLU B:88 B:111 103.0 0.542 G -65.8 -30.4 103.0 0.542 0.0 HOH
6.501
C
O
2nyl 2 Q13362 90.93 0.0 X-RAY
2006-12-12 GLU B:84 B:111 117.0 0.616 G -59.2 -27.0 117.0 0.616 0.0
GLU E:84 E:111 117.0 0.616 G -53.2 -30.3 NA NA NA
2nym 2 Q13362 90.93 0.0 X-RAY
2006-12-12 GLU B:84 B:111 119.0 0.626 G -66.2 -8.6 119.0 0.626 0.0
GLU E:84 E:111 120.0 0.632 G -75.9 -10.6 NA NA NA
5jja 1 Q13362 88.64 0.0 X-RAY
2016-07-13 GLU A:93 NA:NA DO NA DO DO DO NA NA NA
GLU B:93 NA:NA DO NA DO DO DO NA NA NA
6toq 2 Q13362 88.89 0.0 X-RAY
2020-10-21 GLU B:111 NA:NA DO NA DO DO DO NA NA NA
2jak 1 Q13362 88.89 0.0 X-RAY
2006-12-04 GLU A:133 NA:NA DO NA DO DO DO NA NA NA
5k6s 1 Q13362 89.14 0.0 X-RAY
2016-12-07 GLU A:96 NA:NA DO NA DO DO DO NA NA NA
5sw9 1 Q13362 89.14 0.0 X-RAY
2016-11-30 GLU A:96 NA:NA DO NA DO DO DO NA NA NA
5swf 1 Q13362 89.14 0.0 X-RAY
2016-11-30 GLU A:96 NA:NA DO NA DO DO DO NA NA NA
6oyl 1 Q13362 89.14 0.0 X-RAY
2020-03-25 GLU A:96 NA:NA DO NA DO DO DO NA NA NA
6vro 1 Q13362 89.14 0.0 X-RAY
2020-03-25 GLU A:96 NA:NA DO NA DO DO DO NA NA NA
7ouf 2 O75475,Q13362 88.89 0.0 EM
2021-08-18 GLU C:438 NA:NA DO NA DO DO DO NA NA NA
GLU H:438 NA:NA DO NA DO DO DO NA NA NA
7oug 2 O75475,Q13362 88.89 0.0 EM
2021-08-18 GLU C:438 NA:NA DO NA DO DO DO NA NA NA
GLU H:438 NA:NA DO NA DO DO DO NA NA NA
7ouh 2 ? 88.89 0.0 EM
2021-08-18 GLU C:438 NA:NA DO NA DO DO DO NA NA NA
GLU H:438 NA:NA DO NA DO DO DO NA NA NA
7pel 2 O75475,Q13362 88.89 0.0 EM
2021-08-25 GLU C:438 NA:NA DO NA DO DO DO NA NA NA
GLU H:438 NA:NA DO NA DO DO DO NA NA NA
6voy 2 Q13362 89.21 0.0 EM
2020-07-01 GLU E:92 NA:NA DO NA DO DO DO NA NA NA
GLU F:92 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14738-f1 1 Q14738 100.0 0.0 GLU A:197 A:197 117.0 0.616 T -74.1 -17.4
af-q13362-f1 1 Q13362 81.45 0.0 GLU A:121 A:121 114.0 0.6 G -70.1 -20.0