Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42975009 . G A CCDS4878.1:NM_006245.3:c.598Gag>Aag_NP_006236.1:p.200E>K Homo sapiens protein phosphatase 2 regulatory subunit B'delta (PPP2R5D), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2npp 2 Q13362 87.89 0.0 X-RAY
 2006-12-12 GLU B:124 B:114 158.0 0.832 -76.2 113.4 NA NA NA
GLU E:124 E:114 158.0 0.832 -76.0 115.9 152.0 0.8 0.032 F:P67775:0.032
2iae 2 Q13362 88.21 0.0 X-RAY
 2006-12-26 GLU B:95 B:124 56.0 NA -66.9 98.4 56.0 NA NA
GLU E:95 E:124 68.0 NA -86.3 112.3 NA NA NA
3fga 2 Q13362 88.83 0.0 X-RAY
 2009-09-22 GLU B:91 B:114 73.0 NA -58.4 131.2 69.0 NA NA C:P67775:NA
 HOH
 8.163
 N
 O
2nyl 2 Q13362 90.93 0.0 X-RAY
 2006-12-12 GLU B:87 B:114 166.0 0.874 -70.6 116.9 140.0 0.737 0.137 C:P67775:0.137
GLU E:87 E:114 168.0 0.884 -64.9 119.2 NA NA NA
2nym 2 Q13362 90.93 0.0 X-RAY
 2006-12-12 GLU B:87 B:114 167.0 0.879 -71.9 122.0 138.0 0.726 0.153 C:P67775:0.153
GLU E:87 E:114 165.0 0.868 -76.5 127.5 NA NA NA
5jja 1 Q13362 88.64 0.0 X-RAY
 2016-07-13 GLU A:96 A:124 232.0 1.0 360.0 -63.5 232.0 1.0 0.0 HOH
 9.210
 O
 O
GLU B:96 B:124 237.0 1.0 360.0 -9.3 NA NA NA
6toq 2 Q13362 88.89 0.0 X-RAY
 2020-10-21 GLU B:114 AAA:124 92.0 NA -117.8 146.1 92.0 NA NA HOH
 5.418
 N
 O
2jak 1 Q13362 88.89 0.0 X-RAY
 2006-12-04 GLU A:136 NA:NA DO NA DO DO DO NA NA NA
5k6s 1 Q13362 89.14 0.0 X-RAY
 2016-12-07 GLU A:99 NA:NA DO NA DO DO DO NA NA NA
5sw9 1 Q13362 89.14 0.0 X-RAY
 2016-11-30 GLU A:99 NA:NA DO NA DO DO DO NA NA NA
5swf 1 Q13362 89.14 0.0 X-RAY
 2016-11-30 GLU A:99 NA:NA DO NA DO DO DO NA NA NA
6oyl 1 Q13362 89.14 0.0 X-RAY
 2020-03-25 GLU A:99 NA:NA DO NA DO DO DO NA NA NA
6vro 1 Q13362 89.14 0.0 X-RAY
 2020-03-25 GLU A:99 NA:NA DO NA DO DO DO NA NA NA
7ouf 2 O75475,Q13362 88.89 0.0 EM
 2021-08-18 GLU C:441 F:124 216.0 1.0 360.0 143.2 196.0 1.0 0.0 A:Q4QY51:0.105
GLU H:441 C:124 217.0 1.0 360.0 143.3 196.0 1.0 0.0 F:Q4QY51:0.111
7oug 2 O75475,Q13362 88.89 0.0 EM
 2021-08-18 GLU C:441 F:124 222.0 1.0 360.0 141.1 206.0 1.0 0.0 A:Q4QY51:0.084
GLU H:441 C:124 225.0 1.0 360.0 141.1 209.0 1.0 0.0 F:Q4QY51:0.084
7ouh 2 ? 88.89 0.0 EM
 2021-08-18 GLU C:441 F:124 213.0 1.0 360.0 117.0 153.0 0.805 0.195 A:Q4QY51:0.316
GLU H:441 C:124 210.0 1.0 360.0 117.0 150.0 0.789 0.211 F:Q4QY51:0.316
7pel 2 O75475,Q13362 88.89 0.0 EM
 2021-08-25 GLU C:441 C:124 220.0 1.0 360.0 137.6 202.0 1.0 0.0 A:Q4QY51:0.095
GLU H:441 F:124 218.0 1.0 360.0 137.7 201.0 1.0 0.0 F:Q4QY51:0.089
6voy 2 Q13362 89.21 0.0 EM
 2020-07-01 GLU E:95 NA:NA DO NA DO DO DO NA NA NA
GLU F:95 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14738-f1 1 Q14738 100.0 0.0 GLU A:200 A:200 163.0 0.858 -71.7 123.7
af-q13362-f1 1 Q13362 81.45 0.0 GLU A:124 A:124 161.0 0.847 -76.2 126.6