Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42975704 . G A CCDS4878.1:NM_006245.3:c.758cGa>cAa_NP_006236.1:p.253R>Q Homo sapiens protein phosphatase 2 regulatory subunit B'delta (PPP2R5D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
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auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2npp 2 Q13362 87.89 0.0 X-RAY
 2006-12-12 ARG B:177 B:167 83.0 0.369 H -22.4 -68.6 NA NA NA
ARG E:177 E:167 84.0 0.373 H -21.3 -65.0 84.0 0.373 0.0
2iae 2 Q13362 88.21 0.0 X-RAY
 2006-12-26 ARG B:148 B:177 93.0 0.413 H -63.7 -46.6 93.0 0.413 0.0
ARG E:148 E:177 91.0 0.404 H -62.4 -34.1 NA NA NA
3fga 2 Q13362 88.83 0.0 X-RAY
 2009-09-22 ARG B:144 B:167 92.0 0.409 H -64.1 -38.9 92.0 0.409 0.0
2nyl 2 Q13362 90.93 0.0 X-RAY
 2006-12-12 ARG B:140 B:167 79.0 0.351 H -12.5 -86.6 79.0 0.351 0.0
ARG E:140 E:167 78.0 0.347 H -9.7 -87.8 NA NA NA
2nym 2 Q13362 90.93 0.0 X-RAY
 2006-12-12 ARG B:140 B:167 86.0 0.382 H -16.0 -74.1 86.0 0.382 0.0
ARG E:140 E:167 85.0 0.378 H -18.7 -66.3 NA NA NA
5jja 1 Q13362 88.64 0.0 X-RAY
 2016-07-13 ARG A:149 A:177 96.0 0.427 H -73.9 -36.7 96.0 0.427 0.0 HOH
 2.932
 NH1
 O
ARG B:149 B:177 100.0 0.444 H -72.0 -39.5 NA NA NA
6toq 2 Q13362 88.89 0.0 X-RAY
 2020-10-21 ARG B:167 AAA:177 102.0 0.453 H -73.1 -13.4 102.0 0.453 0.0 HOH
 6.777
 O
 O
2jak 1 Q13362 88.89 0.0 X-RAY
 2006-12-04 ARG A:189 A:177 102.0 0.453 H -90.3 -14.8 102.0 0.453 0.0 HOH
 8.944
 N
 O
5k6s 1 Q13362 89.14 0.0 X-RAY
 2016-12-07 ARG A:152 A:177 126.0 0.56 H -67.8 -39.0 126.0 0.56 0.0
5sw9 1 Q13362 89.14 0.0 X-RAY
 2016-11-30 ARG A:152 A:177 127.0 0.564 H -66.2 -38.4 127.0 0.564 0.0 HOH
 6.351
 O
 O
5swf 1 Q13362 89.14 0.0 X-RAY
 2016-11-30 ARG A:152 A:177 120.0 0.533 H -64.0 -41.8 120.0 0.533 0.0 HOH
 6.304
 O
 O
6oyl 1 Q13362 89.14 0.0 X-RAY
 2020-03-25 ARG A:152 A:177 129.0 0.573 H -69.4 -29.9 129.0 0.573 0.0 HOH
 6.628
 O
 O
6vro 1 Q13362 89.14 0.0 X-RAY
 2020-03-25 ARG A:152 A:177 92.0 0.409 H -66.8 -36.8 92.0 0.409 0.0 HOH
 5.190
 N
 O
7ouf 2 O75475,Q13362 88.89 0.0 EM
 2021-08-18 ARG C:494 F:177 104.0 0.462 H -63.5 -40.6 44.0 0.196 0.266 A:Q4QY51:0.267
ARG H:494 C:177 107.0 0.476 H -63.5 -40.6 46.0 0.204 0.272 F:Q4QY51:0.271
7oug 2 O75475,Q13362 88.89 0.0 EM
 2021-08-18 ARG C:494 F:177 114.0 0.507 H -61.2 -44.5 51.0 0.227 0.28 A:Q4QY51:0.28
ARG H:494 C:177 113.0 0.502 H -61.2 -44.5 48.0 0.213 0.289 F:Q4QY51:0.289
7ouh 2 ? 88.89 0.0 EM
 2021-08-18 ARG C:494 F:177 98.0 0.436 H -63.6 -40.7 49.0 0.218 0.218 A:Q4QY51:0.218
ARG H:494 C:177 98.0 0.436 H -63.6 -40.7 47.0 0.209 0.227 F:Q4QY51:0.227
7pel 2 O75475,Q13362 88.89 0.0 EM
 2021-08-25 ARG C:494 C:177 111.0 0.493 H -63.5 -42.4 60.0 0.267 0.226 A:Q4QY51:0.227
ARG H:494 F:177 113.0 0.502 H -63.5 -42.4 63.0 0.28 0.222 F:Q4QY51:0.222
6voy 2 Q13362 89.21 0.0 EM
 2020-07-01 ARG E:148 E:177 89.0 0.396 H -61.4 -61.2 56.0 0.249 0.147 D:P39476+A0A1Y1CAW1:0.147
ARG F:148 F:177 91.0 0.404 H -61.3 -61.1 59.0 0.262 0.142 B:P39476+A0A1Y1CAW1:0.142

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14738-f1 1 Q14738 100.0 0.0 ARG A:253 A:253 86.0 0.382 H -69.6 -37.4
af-q13362-f1 1 Q13362 81.45 0.0 ARG A:177 A:177 87.0 0.387 H -68.6 -41.6