Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 42976203 . A C CCDS4878.1:NM_006245.3:c.1016tAc>tCc_NP_006236.1:p.339Y>S Homo sapiens protein phosphatase 2 regulatory subunit B'delta (PPP2R5D), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2npp 2 Q13362 87.89 0.0 X-RAY
 2006-12-12 TYR B:263 B:253 3.0 0.013 T -138.8 18.4 NA NA NA
TYR E:263 E:253 3.0 0.013 T -138.7 14.3 3.0 0.013 0.0
2iae 2 Q13362 88.21 0.0 X-RAY
 2006-12-26 TYR B:234 B:263 3.0 0.013 G -145.5 17.4 3.0 0.013 0.0
TYR E:234 E:263 4.0 0.017 H -118.2 -9.2 NA NA NA
3fga 2 Q13362 88.83 0.0 X-RAY
 2009-09-22 TYR B:230 B:253 3.0 0.013 T -139.5 5.7 3.0 0.013 0.0 HOH
 5.063
 CB
 O
2nyl 2 Q13362 90.93 0.0 X-RAY
 2006-12-12 TYR B:226 B:253 4.0 0.017 T -99.6 0.6 4.0 0.017 0.0
TYR E:226 E:253 4.0 0.017 T -104.7 5.3 NA NA NA
2nym 2 Q13362 90.93 0.0 X-RAY
 2006-12-12 TYR B:226 B:253 3.0 0.013 T -112.1 17.2 3.0 0.013 0.0
TYR E:226 E:253 3.0 0.013 T -122.3 20.2 NA NA NA
5jja 1 Q13362 88.64 0.0 X-RAY
 2016-07-13 TYR A:235 A:263 4.0 0.017 T -122.8 6.1 4.0 0.017 0.0 HOH
 4.235
 CB
 O
TYR B:235 B:263 3.0 0.013 H -123.7 8.8 NA NA NA
6toq 2 Q13362 88.89 0.0 X-RAY
 2020-10-21 TYR B:253 AAA:263 0.0 0.0 T -137.4 9.9 0.0 0.0 0.0 HOH
 7.806
 CA
 O
2jak 1 Q13362 88.89 0.0 X-RAY
 2006-12-04 TYR A:275 A:263 0.0 0.0 T -132.4 3.4 0.0 0.0 0.0 HOH
 8.316
 CA
 O
5k6s 1 Q13362 89.14 0.0 X-RAY
 2016-12-07 TYR A:238 A:263 3.0 0.013 H -120.4 9.0 3.0 0.013 0.0 HOH
 7.140
 CE2
 O
5sw9 1 Q13362 89.14 0.0 X-RAY
 2016-11-30 TYR A:238 A:263 3.0 0.013 H -125.8 12.6 3.0 0.013 0.0 HOH
 6.809
 C
 O
5swf 1 Q13362 89.14 0.0 X-RAY
 2016-11-30 TYR A:238 A:263 4.0 0.017 H -125.1 11.6 4.0 0.017 0.0 HOH
 5.148
 CD2
 O
6oyl 1 Q13362 89.14 0.0 X-RAY
 2020-03-25 TYR A:238 A:263 5.0 0.022 H -112.4 12.3 5.0 0.022 0.0 HOH
 7.932
 OH
 O
6vro 1 Q13362 89.14 0.0 X-RAY
 2020-03-25 TYR A:238 A:263 3.0 0.013 H -128.8 12.8 3.0 0.013 0.0 HOH
 7.613
 CA
 O
7ouf 2 O75475,Q13362 88.89 0.0 EM
 2021-08-18 TYR C:580 F:263 2.0 0.009 G -126.4 29.9 2.0 0.009 0.0
TYR H:580 C:263 2.0 0.009 G -126.4 29.9 2.0 0.009 0.0
7oug 2 O75475,Q13362 88.89 0.0 EM
 2021-08-18 TYR C:580 F:263 1.0 0.004 G -124.9 32.1 1.0 0.004 0.0
TYR H:580 C:263 1.0 0.004 G -125.0 32.1 1.0 0.004 0.0
7ouh 2 ? 88.89 0.0 EM
 2021-08-18 TYR C:580 F:263 3.0 0.013 G -139.7 27.1 3.0 0.013 0.0
TYR H:580 C:263 3.0 0.013 G -139.7 27.1 3.0 0.013 0.0
7pel 2 O75475,Q13362 88.89 0.0 EM
 2021-08-25 TYR C:580 C:263 8.0 0.035 G -119.9 26.0 8.0 0.035 0.0
TYR H:580 F:263 10.0 0.043 G -119.9 26.0 10.0 0.043 0.0
6voy 2 Q13362 89.21 0.0 EM
 2020-07-01 TYR E:234 E:263 20.0 0.087 T -137.4 10.6 20.0 0.087 0.0
TYR F:234 F:263 18.0 0.078 T -137.6 10.9 18.0 0.078 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q14738-f1 1 Q14738 100.0 0.0 TYR A:339 A:339 4.0 0.017 G -131.1 7.2
af-q13362-f1 1 Q13362 81.45 0.0 TYR A:263 A:263 3.0 0.013 T -129.2 4.5