Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 87796084 . T A CCDS5007.1:NM_000735.3:c.157Atg>Ttg_NP_000726.1:p.53M>L Homo sapiens glycoprotein hormones, alpha polypeptide (CGA), transcript variant 2, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7fig 6 P01215 100.0 7e-85 EM
 2021-09-29 MET F:53 X:29 89.0 0.481 E -148.5 141.5 59.0 0.319 0.162 G:P0DN86:0.162
7fii 5 P01215 100.0 7e-85 EM
 2021-09-29 MET E:53 X:29 75.0 0.405 E -156.4 162.4 51.0 0.276 0.129 F:P0DN86:0.13
7fih 5 P01215 100.0 6e-84 EM
 2021-09-29 MET E:52 X:29 86.0 0.465 E -140.0 152.4 55.0 0.297 0.168 F:P0DN86:0.168
1dz7 1 P01215 100.0 7e-66 NMR
 2000-02-29 MET A:29 A:29 106.0 0.573 -146.4 128.9 106.0 0.573 0.0
1e9j 1 P01215 100.0 7e-66 NMR
 2002-07-25 MET A:29 A:29 81.0 0.438 -148.2 123.4 81.0 0.438 0.0
1fl7 1 P01215 100.0 7e-66 X-RAY
 2001-03-14 MET A:29 A:29 77.0 0.416 E -167.7 148.5 32.0 0.173 0.243 B:P01225:0.243
MET C:29 C:29 81.0 0.438 E -150.0 152.7 NA NA NA
1hcn 1 P01215 100.0 7e-66 X-RAY
 1994-09-30 MET A:29 A:29 92.0 0.497 E -146.6 141.4 67.0 0.362 0.135 B:P01233:0.135
 HOH
 8.684
 CG
 O
1hd4 1 P01215 100.0 7e-66 NMR
 2000-12-07 MET A:29 A:29 63.0 0.341 -58.9 -85.0 63.0 0.341 0.0
1xwd 1 P01215 100.0 7e-66 X-RAY
 2005-01-25 MET A:29 A:29 76.0 0.411 E -144.8 157.6 27.0 0.146 0.265 B:P01225:0.265
 SO4
 5.648
 CE
 O1
MET D:29 D:29 74.0 0.4 E -148.5 155.3 NA NA NA
4mqw 1 Q96QJ4 98.91 3e-65 X-RAY
 2014-04-09 MET A:29 A:29 71.0 0.384 E -156.8 141.2 11.0 0.059 0.325 B:P01225:0.324
 HOH
 7.110
 CA
 O
MET D:29 D:29 64.0 0.346 E -144.4 153.5 NA NA NA
MET G:29 G:29 66.0 0.357 E -152.6 158.0 NA NA NA
1hrp 1 P01215 98.91 3e-65 X-RAY
 1994-11-01 MET A:29 A:29 101.0 0.546 E -125.4 156.6 75.0 0.405 0.141 B:P01233:0.141
1qfw 1 P01215 98.91 3e-65 X-RAY
 2000-04-26 MET A:29 A:29 88.0 0.476 E -167.9 133.9 59.0 0.319 0.157 B:P01233:0.157
4ay9 1 Q96QJ4 98.91 3e-65 X-RAY
 2012-08-08 MET A:29 A:29 66.0 0.357 E -164.6 154.5 NA NA NA
MET C:29 D:29 65.0 0.351 E -157.1 157.1 11.0 0.059 0.292 D:P01225:0.292
 HOH
 7.001
 CA
 O
MET E:29 G:29 65.0 0.351 E -165.6 149.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p01215-f1 1 P01215 100.0 3e-85 MET A:53 A:53 79.0 0.427 E -144.3 154.9