Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 87796104 . C A CCDS5007.1:NM_000735.3:c.137gGt>gTt_NP_000726.1:p.46G>V Homo sapiens glycoprotein hormones, alpha polypeptide (CGA), transcript variant 2, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7fig 6 P01215 100.0 7e-85 EM
2021-09-29 GLY F:46 X:22 88.0 1.0 T 78.4 -0.5 88.0 1.0 0.0 NAG
5.520
O
O3
7fii 5 P01215 100.0 7e-85 EM
2021-09-29 GLY E:46 X:22 93.0 1.0 T 80.2 -1.6 93.0 1.0 0.0
7fih 5 P01215 100.0 6e-84 EM
2021-09-29 GLY E:45 X:22 83.0 1.0 T 79.6 6.4 83.0 1.0 0.0
1dz7 1 P01215 100.0 7e-66 NMR
2000-02-29 GLY A:22 A:22 78.0 1.0 T 131.5 13.1 78.0 1.0 0.0
1e9j 1 P01215 100.0 7e-66 NMR
2002-07-25 GLY A:22 A:22 78.0 1.0 T 146.7 -10.3 78.0 1.0 0.0 NAG
4.380
O
HO3
1fl7 1 P01215 100.0 7e-66 X-RAY
2001-03-14 GLY A:22 A:22 91.0 1.0 T 67.9 -33.3 91.0 1.0 0.0 NAG
NAG
MAN
4.744
5.691
8.805
O
O
O
O3
O6
O2
GLY C:22 C:22 89.0 1.0 T 64.4 16.8 NA NA NA
1hcn 1 P01215 100.0 7e-66 X-RAY
1994-09-30 GLY A:22 A:22 88.0 1.0 T 84.0 -15.9 88.0 1.0 0.0 NAG
HOH
4.028
3.554
O
N
O3
O
1hd4 1 P01215 100.0 7e-66 NMR
2000-12-07 GLY A:22 A:22 76.0 1.0 T 147.9 -8.7 76.0 1.0 0.0 NAG
NAG
MAN
NAG
4.344
7.853
8.988
8.121
O
O
HA2
HA2
HO3
H2
O3
HO6
1xwd 1 P01215 100.0 7e-66 X-RAY
2005-01-25 GLY A:22 A:22 88.0 1.0 T 88.6 -25.8 88.0 1.0 0.0 NAG
4.799
O
O3
GLY D:22 D:22 74.0 0.987 S -74.3 -59.0 NA NA NA
4mqw 1 Q96QJ4 98.91 3e-65 X-RAY
2014-04-09 GLY A:22 A:22 88.0 1.0 T 78.4 -33.7 88.0 1.0 0.0 NAG
3.953
O
O3
GLY D:22 D:22 85.0 1.0 T 87.5 -24.5 NA NA NA
GLY G:22 G:22 87.0 1.0 T 87.3 -20.8 NA NA NA
1hrp 1 P01215 98.91 3e-65 X-RAY
1994-11-01 GLY A:22 A:22 89.0 1.0 T 71.4 27.6 89.0 1.0 0.0 NAG
NAG
5.574
6.628
O
CA
O3
O6
1qfw 1 P01215 98.91 3e-65 X-RAY
2000-04-26 GLY A:22 A:22 87.0 1.0 T 85.3 -10.0 82.0 1.0 0.0 D:None:0.067
NAG
5.013
O
O3
4ay9 1 Q96QJ4 98.91 3e-65 X-RAY
2012-08-08 GLY A:22 A:22 88.0 1.0 T 81.5 -16.0 NA NA NA
GLY C:22 D:22 89.0 1.0 T 81.1 -18.5 89.0 1.0 0.0 NAG
HOH
4.170
9.924
O
O
O3
O
GLY E:22 G:22 90.0 1.0 T 80.2 -12.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p01215-f1 1 P01215 100.0 3e-85 GLY A:46 A:46 86.0 1.0 T 82.8 -5.0