Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 87796108 . G A CCDS5007.1:NM_000735.3:c.133Ccg>Tcg_NP_000726.1:p.45P>S Homo sapiens glycoprotein hormones, alpha polypeptide (CGA), transcript variant 2, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7fig 6 P01215 100.0 7e-85 EM
 2021-09-29 PRO F:45 X:21 107.0 0.738 T -51.9 128.1 107.0 0.738 0.0 NAG
 8.429
 O
 C8
7fii 5 P01215 100.0 7e-85 EM
 2021-09-29 PRO E:45 X:21 107.0 NA T -60.1 140.9 107.0 NA NA
7fih 5 P01215 100.0 6e-84 EM
 2021-09-29 PRO E:44 X:21 136.0 0.938 T -57.3 123.3 136.0 0.938 0.0
1dz7 1 P01215 100.0 7e-66 NMR
 2000-02-29 PRO A:21 A:21 141.0 0.972 T -58.8 68.8 141.0 0.972 0.0
1e9j 1 P01215 100.0 7e-66 NMR
 2002-07-25 PRO A:21 A:21 145.0 1.0 T -53.4 68.0 145.0 1.0 0.0 NAG
 8.414
 C
 HO3
1fl7 1 P01215 100.0 7e-66 X-RAY
 2001-03-14 PRO A:21 A:21 127.0 0.876 T -42.3 131.5 127.0 0.876 0.0 NAG
NAG
 7.790
9.528
 O
O
 O3
O6
PRO C:21 C:21 130.0 0.897 T -68.7 134.9 NA NA NA
1hcn 1 P01215 100.0 7e-66 X-RAY
 1994-09-30 PRO A:21 A:21 135.0 0.931 T -51.8 135.3 135.0 0.931 0.0 NAG
HOH
 7.836
2.961
 C
N
 O3
O
1hd4 1 P01215 100.0 7e-66 NMR
 2000-12-07 PRO A:21 A:21 136.0 0.938 T -61.2 63.1 136.0 0.938 0.0 NAG
 8.450
 C
 H83
1xwd 1 P01215 100.0 7e-66 X-RAY
 2005-01-25 PRO A:21 A:21 136.0 0.938 T -60.7 130.7 136.0 0.938 0.0 NAG
 8.569
 C
 O3
PRO D:21 D:21 142.0 0.979 S -48.5 -48.3 NA NA NA
4mqw 1 Q96QJ4 98.91 3e-65 X-RAY
 2014-04-09 PRO A:21 A:21 123.0 0.848 T -60.4 143.2 123.0 0.848 0.0 NAG
 7.700
 O
 O3
PRO D:21 D:21 121.0 0.834 T -66.7 122.2 NA NA NA
PRO G:21 G:21 123.0 0.848 T -60.4 121.2 NA NA NA
1hrp 1 P01215 98.91 3e-65 X-RAY
 1994-11-01 PRO A:21 A:21 133.0 0.917 T -53.2 130.3 133.0 0.917 0.0 NAG
NAG
 8.659
8.829
 C
C
 O3
O3
1qfw 1 P01215 98.91 3e-65 X-RAY
 2000-04-26 PRO A:21 A:21 104.0 0.717 T -39.7 127.9 13.0 0.09 0.627 D:None:0.628
 NAG
 8.190
 C
 O7
4ay9 1 Q96QJ4 98.91 3e-65 X-RAY
 2012-08-08 PRO A:21 A:21 129.0 0.89 T -56.6 129.1 NA NA NA
PRO C:21 D:21 128.0 0.883 T -57.8 131.0 128.0 0.883 0.0 NAG
 8.023
 C
 O3
PRO E:21 G:21 128.0 0.883 T -58.1 128.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p01215-f1 1 P01215 100.0 3e-85 PRO A:45 A:45 132.0 0.91 T -53.4 119.1