Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107542191 . G A CCDS5749.1:NM_000108.3:c.127Gat>Aat_NP_000099.2:p.43D>N Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 ASP A:29 A:8 39.0 0.26 E -87.8 -37.6 39.0 0.26 0.0 HOH
 7.292
 OD2
 O
ASP B:29 B:8 44.0 0.293 E -83.0 -39.7 44.0 0.293 0.0
ASP C:29 C:8 36.0 0.24 E -89.7 -38.4 NA NA NA
ASP D:29 D:8 46.0 0.307 E -74.7 -46.6 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 ASP A:8 A:8 48.0 0.32 E -78.4 -60.5 48.0 0.32 0.0
ASP B:8 B:8 55.0 0.367 E -88.9 -49.1 55.0 0.367 0.0 HOH
 6.456
 OD2
 O
ASP C:8 C:8 45.0 0.3 E -70.8 -46.8 NA NA NA
ASP D:8 D:8 29.0 0.193 E -115.5 -11.0 NA NA NA
ASP E:8 E:8 47.0 0.313 E -87.6 -32.4 NA NA NA
ASP F:8 F:8 57.0 0.38 E -95.5 -18.3 NA NA NA
ASP G:8 G:8 39.0 0.26 S -85.9 -45.2 NA NA NA
ASP H:8 H:8 63.0 0.42 E -74.0 -30.0 NA NA NA
ASP I:8 I:8 61.0 0.407 S -97.7 -18.0 NA NA NA
ASP J:8 J:8 45.0 0.3 S -81.6 -0.1 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 ASP A:30 A:8 45.0 0.3 E -86.8 -40.5 45.0 0.3 0.0 SO4
HOH
 9.738
7.252
 O
O
 O4
O
ASP B:30 B:8 44.0 0.293 E -89.4 -39.4 44.0 0.293 0.0 HOH
 3.699
 OD2
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ASP A:30 A:8 40.0 0.267 E -83.5 -42.3 40.0 0.267 0.0 HOH
 4.707
 OD1
 O
ASP B:30 B:8 44.0 0.293 E -85.6 -41.8 44.0 0.293 0.0 HOH
 8.184
 H
 O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 ASP A:8 A:8 34.0 0.227 E -90.4 -39.0 34.0 0.227 0.0 HOH
 3.222
 OD1
 O
ASP B:8 B:8 39.0 0.26 E -89.1 -58.7 39.0 0.26 0.0 HOH
 6.869
 OD2
 O
ASP C:8 C:8 43.0 0.287 E -91.8 -47.9 NA NA NA
ASP D:8 D:8 30.0 0.2 E -93.0 -38.3 NA NA NA
ASP E:8 E:8 39.0 0.26 E -87.7 -40.2 NA NA NA
ASP F:8 F:8 36.0 0.24 E -93.6 -41.4 NA NA NA
ASP G:8 G:8 39.0 0.26 E -94.3 -43.0 NA NA NA
ASP H:8 H:8 26.0 0.173 E -86.8 -45.7 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 ASP A:8 A:8 35.0 0.233 E -88.0 -40.0 35.0 0.233 0.0 HOH
 3.230
 OD1
 O
ASP B:8 B:8 46.0 0.307 E -83.4 -46.3 46.0 0.307 0.0 HOH
 7.239
 OD1
 O
ASP C:8 C:8 38.0 0.253 E -90.0 -43.0 NA NA NA
ASP D:8 D:8 39.0 0.26 E -88.5 -41.5 NA NA NA
ASP E:8 E:8 34.0 0.227 E -82.9 -46.2 NA NA NA
ASP F:8 F:8 33.0 0.22 E -87.1 -35.2 NA NA NA
ASP G:8 G:8 41.0 0.273 E -89.7 -38.0 NA NA NA
ASP H:8 H:8 45.0 0.3 E -83.3 -43.1 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 ASP A:8 A:8 41.0 0.273 E -89.2 -37.1 41.0 0.273 0.0 HOH
 3.676
 OD1
 O
ASP B:8 B:8 43.0 0.287 E -84.5 -42.2 43.0 0.287 0.0
ASP C:8 C:8 39.0 0.26 E -87.4 -42.0 NA NA NA
ASP D:8 D:8 40.0 0.267 E -88.4 -35.3 NA NA NA
ASP E:8 E:8 37.0 0.247 E -90.6 -32.2 NA NA NA
ASP F:8 F:8 34.0 0.227 E -83.6 -43.0 NA NA NA
ASP G:8 G:8 52.0 0.347 E -81.8 -39.2 NA NA NA
ASP H:8 H:8 34.0 0.227 E -87.1 -42.8 NA NA NA
ASP I:8 I:8 23.0 0.153 E -88.2 -47.7 NA NA NA
ASP J:8 J:8 35.0 0.233 E -83.4 -46.3 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 ASP A:29 A:8 32.0 0.213 E -79.1 -41.2 32.0 0.213 0.0
ASP B:29 B:8 49.0 0.327 E -79.8 -37.2 49.0 0.327 0.0
ASP C:29 C:8 67.0 0.447 E -83.9 -38.8 NA NA NA
ASP D:29 D:8 41.0 0.273 E -83.1 -38.9 NA NA NA
ASP E:29 E:8 33.0 0.22 E -86.6 -40.8 NA NA NA
ASP F:29 F:8 41.0 0.273 E -84.9 -41.7 NA NA NA
ASP G:29 G:8 72.0 0.48 E -83.8 -39.3 NA NA NA
ASP H:29 H:8 41.0 0.273 E -80.4 -40.3 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ASP A:30 A:8 38.0 0.253 E -85.5 -44.4 38.0 0.253 0.0 HOH
 6.139
 O
 O
ASP B:30 B:8 42.0 0.28 E -86.2 -42.7 42.0 0.28 0.0 HOH
 6.731
 H
 O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 ASP A:30 A:8 39.0 0.26 E -84.4 -41.5 39.0 0.26 0.0 HOH
 4.931
 N
 O
ASP B:30 B:8 36.0 0.24 E -81.9 -38.3 36.0 0.24 0.0 HOH
 4.890
 N
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 ASP A:30 A:8 41.0 0.273 E -83.7 -42.7 41.0 0.273 0.0 SO4
HOH
 9.620
3.592
 O
OD1
 O4
O
ASP B:30 B:8 43.0 0.287 E -76.9 -40.6 43.0 0.287 0.0 HOH
 4.717
 N
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ASP A:30 A:8 43.0 0.287 E -86.3 -40.2 43.0 0.287 0.0 HOH
 4.485
 HB3
 O
ASP B:30 B:8 46.0 0.307 E -85.1 -40.0 46.0 0.307 0.0 HOH
 2.614
 OD2
 O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ASP A:30 A:8 44.0 0.293 E -85.3 -40.7 44.0 0.293 0.0 SO4
HOH
 9.561
4.618
 O
HA
 O3
O
ASP B:30 B:8 44.0 0.293 E -85.6 -39.5 44.0 0.293 0.0 HOH
 4.463
 HA
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ASP A:30 A:8 46.0 0.307 E -82.4 -42.6 46.0 0.307 0.0 HOH
 4.714
 HA
 O
ASP B:30 B:8 46.0 0.307 E -82.7 -40.2 46.0 0.307 0.0 HOH
 2.619
 OD1
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ASP A:30 A:8 42.0 0.28 E -83.5 -42.2 42.0 0.28 0.0 HOH
 4.427
 HB3
 O
ASP B:30 B:8 48.0 0.32 E -85.3 -40.9 48.0 0.32 0.0 HOH
 3.588
 CG
 O
ASP C:30 C:8 43.0 0.287 E -85.6 -41.0 NA NA NA
ASP D:30 D:8 39.0 0.26 E -86.0 -37.5 NA NA NA
ASP E:30 E:8 41.0 0.273 E -85.3 -42.6 NA NA NA
ASP F:30 F:8 50.0 0.333 E -84.5 -43.1 NA NA NA
ASP G:30 G:8 42.0 0.28 E -85.9 -42.0 NA NA NA
ASP H:30 H:8 45.0 0.3 E -84.6 -43.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 ASP A:43 A:43 35.0 0.233 E -79.8 -38.7