Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr7 | 107542194 | . | G | A | CCDS5749.1:NM_000108.3:c.130Gta>Ata_NP_000099.2:p.44V>I | Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3rnm | 1 | P09622 | 99.37 | 0.0 |
X-RAY |
2011-05-04 | VAL | A:30 | A:9 | 0.0 | 0.0 | E | -138.6 | 120.5 | 0.0 | 0.0 | 0.0 |
HOH |
7.118 |
O |
O |
||
| VAL | B:30 | B:9 | 2.0 | 0.013 | E | -138.4 | 130.3 | 2.0 | 0.013 | 0.0 | |||||||||||||
| VAL | C:30 | C:9 | 0.0 | 0.0 | E | -132.2 | 121.3 | NA | NA | NA | |||||||||||||
| VAL | D:30 | D:9 | 0.0 | 0.0 | E | -135.7 | 130.5 | NA | NA | NA | |||||||||||||
| 1zy8 | 1 | P09622 | 100.0 | 0.0 |
X-RAY |
2005-11-15 | VAL | A:9 | A:9 | 2.0 | 0.013 | E | -118.4 | 125.4 | 2.0 | 0.013 | 0.0 |
HOH |
9.530 |
CG2 |
O |
||
| VAL | B:9 | B:9 | 1.0 | 0.006 | E | -125.2 | 135.4 | 1.0 | 0.006 | 0.0 |
HOH |
8.093 |
CG1 |
O |
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| VAL | C:9 | C:9 | 0.0 | 0.0 | E | -123.8 | 125.9 | NA | NA | NA | |||||||||||||
| VAL | D:9 | D:9 | 0.0 | 0.0 | E | -141.0 | 110.3 | NA | NA | NA | |||||||||||||
| VAL | E:9 | E:9 | 0.0 | 0.0 | E | -144.1 | 117.9 | NA | NA | NA | |||||||||||||
| VAL | F:9 | F:9 | 0.0 | 0.0 | E | -152.7 | 129.0 | NA | NA | NA | |||||||||||||
| VAL | G:9 | G:9 | 0.0 | 0.0 | E | -136.4 | 138.8 | NA | NA | NA | |||||||||||||
| VAL | H:9 | H:9 | 0.0 | 0.0 | E | -144.5 | 137.0 | NA | NA | NA | |||||||||||||
| VAL | I:9 | I:9 | 1.0 | 0.006 | E | -155.2 | 126.4 | NA | NA | NA | |||||||||||||
| VAL | J:9 | J:9 | 2.0 | 0.013 | E | -141.3 | 126.7 | NA | NA | NA | |||||||||||||
| 6i4q | 1 | P09622 | 100.0 | 0.0 |
X-RAY |
2019-11-20 | VAL | A:31 | A:9 | 0.0 | 0.0 | E | -137.6 | 126.4 | 0.0 | 0.0 | 0.0 |
HOH |
6.570 |
HG22 |
O |
||
| VAL | B:31 | B:9 | 0.0 | 0.0 | E | -135.8 | 125.2 | 0.0 | 0.0 | 0.0 |
HOH |
6.671 |
HG23 |
O |
|||||||||
| 6i4t | 1 | P09622 | 99.79 | 0.0 |
X-RAY |
2019-11-20 | VAL | A:31 | A:9 | 0.0 | 0.0 | E | -136.8 | 123.2 | 0.0 | 0.0 | 0.0 |
HOH |
7.101 |
HG23 |
O |
||
| VAL | B:31 | B:9 | 0.0 | 0.0 | E | -136.2 | 123.2 | 0.0 | 0.0 | 0.0 |
HOH |
9.393 |
HG22 |
O |
|||||||||
| 1zmc | 1 | P09622 | 99.79 | 0.0 |
X-RAY |
2005-06-28 | VAL | A:9 | A:9 | 0.0 | 0.0 | E | -135.5 | 126.2 | 0.0 | 0.0 | 0.0 |
HOH |
6.612 |
CG2 |
O |
||
| VAL | B:9 | B:9 | 0.0 | 0.0 | E | -119.4 | 125.3 | 0.0 | 0.0 | 0.0 |
HOH |
6.528 |
O |
O |
|||||||||
| VAL | C:9 | C:9 | 0.0 | 0.0 | E | -128.5 | 125.8 | NA | NA | NA | |||||||||||||
| VAL | D:9 | D:9 | 0.0 | 0.0 | E | -133.0 | 123.9 | NA | NA | NA | |||||||||||||
| VAL | E:9 | E:9 | 0.0 | 0.0 | E | -134.7 | 125.7 | NA | NA | NA | |||||||||||||
| VAL | F:9 | F:9 | 0.0 | 0.0 | E | -127.9 | 126.2 | NA | NA | NA | |||||||||||||
| VAL | G:9 | G:9 | 0.0 | 0.0 | E | -126.4 | 126.7 | NA | NA | NA | |||||||||||||
| VAL | H:9 | H:9 | 0.0 | 0.0 | E | -130.5 | 130.0 | NA | NA | NA | |||||||||||||
| 1zmd | 1 | P09622 | 99.79 | 0.0 |
X-RAY |
2005-06-28 | VAL | A:9 | A:9 | 0.0 | 0.0 | E | -136.9 | 125.6 | 0.0 | 0.0 | 0.0 |
HOH |
6.137 |
O |
O |
||
| VAL | B:9 | B:9 | 2.0 | 0.013 | E | -128.9 | 128.7 | 2.0 | 0.013 | 0.0 |
HOH |
7.043 |
O |
O |
|||||||||
| VAL | C:9 | C:9 | 0.0 | 0.0 | E | -133.5 | 123.4 | NA | NA | NA | |||||||||||||
| VAL | D:9 | D:9 | 0.0 | 0.0 | E | -131.4 | 123.7 | NA | NA | NA | |||||||||||||
| VAL | E:9 | E:9 | 0.0 | 0.0 | E | -129.2 | 123.9 | NA | NA | NA | |||||||||||||
| VAL | F:9 | F:9 | 0.0 | 0.0 | E | -139.7 | 124.7 | NA | NA | NA | |||||||||||||
| VAL | G:9 | G:9 | 0.0 | 0.0 | E | -136.8 | 126.8 | NA | NA | NA | |||||||||||||
| VAL | H:9 | H:9 | 0.0 | 0.0 | E | -135.5 | 126.0 | NA | NA | NA | |||||||||||||
| 2f5z | 1 | P09622 | 99.79 | 0.0 |
X-RAY |
2006-01-17 | VAL | A:9 | A:9 | 0.0 | 0.0 | E | -136.7 | 122.6 | 0.0 | 0.0 | 0.0 |
HOH |
7.418 |
N |
O |
||
| VAL | B:9 | B:9 | 2.0 | 0.013 | E | -133.3 | 128.4 | 2.0 | 0.013 | 0.0 | |||||||||||||
| VAL | C:9 | C:9 | 0.0 | 0.0 | E | -133.5 | 125.6 | NA | NA | NA | |||||||||||||
| VAL | D:9 | D:9 | 0.0 | 0.0 | E | -137.9 | 119.9 | NA | NA | NA | |||||||||||||
| VAL | E:9 | E:9 | 0.0 | 0.0 | E | -142.0 | 125.1 | NA | NA | NA | |||||||||||||
| VAL | F:9 | F:9 | 0.0 | 0.0 | E | -132.2 | 118.2 | NA | NA | NA | |||||||||||||
| VAL | G:9 | G:9 | 0.0 | 0.0 | E | -136.2 | 128.6 | NA | NA | NA | |||||||||||||
| VAL | H:9 | H:9 | 0.0 | 0.0 | E | -133.3 | 125.0 | NA | NA | NA | |||||||||||||
| VAL | I:9 | I:9 | 0.0 | 0.0 | E | -130.3 | 123.3 | NA | NA | NA | |||||||||||||
| VAL | J:9 | J:9 | 0.0 | 0.0 | E | -131.9 | 122.2 | NA | NA | NA | |||||||||||||
| 5nhg | 1 | P09622 | 100.0 | 0.0 |
X-RAY |
2018-05-16 | VAL | A:30 | A:9 | 0.0 | 0.0 | E | -133.6 | 126.8 | 0.0 | 0.0 | 0.0 |
HOH |
9.152 |
HG22 |
O |
||
| VAL | B:30 | B:9 | 0.0 | 0.0 | E | -132.3 | 127.8 | 0.0 | 0.0 | 0.0 |
HOH |
9.475 |
HG22 |
O |
|||||||||
| VAL | C:30 | C:9 | 0.0 | 0.0 | E | -131.0 | 125.7 | NA | NA | NA | |||||||||||||
| VAL | D:30 | D:9 | 0.0 | 0.0 | E | -135.2 | 129.4 | NA | NA | NA | |||||||||||||
| VAL | E:30 | E:9 | 0.0 | 0.0 | E | -136.4 | 127.7 | NA | NA | NA | |||||||||||||
| VAL | F:30 | F:9 | 0.0 | 0.0 | E | -131.6 | 125.5 | NA | NA | NA | |||||||||||||
| VAL | G:30 | G:9 | 0.0 | 0.0 | E | -132.8 | 127.9 | NA | NA | NA | |||||||||||||
| VAL | H:30 | H:9 | 0.0 | 0.0 | E | -132.8 | 133.3 | NA | NA | NA | |||||||||||||
| 6i4u | 1 | P09622 | 99.79 | 0.0 |
X-RAY |
2019-11-20 | VAL | A:31 | A:9 | 0.0 | 0.0 | E | -133.1 | 126.1 | 0.0 | 0.0 | 0.0 |
HOH |
6.664 |
HG22 |
O |
||
| VAL | B:31 | B:9 | 0.0 | 0.0 | E | -133.9 | 127.4 | 0.0 | 0.0 | 0.0 |
HOH |
6.926 |
H |
O |
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| 5j5z | 1 | P09622 | 99.79 | 0.0 |
X-RAY |
2017-11-15 | VAL | A:31 | A:9 | 0.0 | 0.0 | E | -132.5 | 126.6 | 0.0 | 0.0 | 0.0 |
HOH |
6.982 |
O |
O |
||
| VAL | B:31 | B:9 | 0.0 | 0.0 | E | -131.9 | 131.2 | 0.0 | 0.0 | 0.0 |
HOH |
6.964 |
O |
O |
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| 6hg8 | 1 | P09622 | 99.79 | 0.0 |
X-RAY |
2019-09-04 | VAL | A:31 | A:9 | 0.0 | 0.0 | E | -132.9 | 128.5 | 0.0 | 0.0 | 0.0 |
HOH |
6.082 |
CG2 |
O |
||
| VAL | B:31 | B:9 | 0.0 | 0.0 | E | -133.3 | 126.2 | 0.0 | 0.0 | 0.0 |
HOH |
6.889 |
N |
O |
|||||||||
| 6i4r | 1 | P09622 | 99.79 | 0.0 |
X-RAY |
2019-11-20 | VAL | A:31 | A:9 | 0.0 | 0.0 | E | -136.0 | 125.1 | 0.0 | 0.0 | 0.0 |
HOH |
5.542 |
HG22 |
O |
||
| VAL | B:31 | B:9 | 0.0 | 0.0 | E | -135.2 | 124.9 | 0.0 | 0.0 | 0.0 |
HOH |
5.753 |
HG22 |
O |
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| 6i4p | 1 | P09622 | 99.79 | 0.0 |
X-RAY |
2019-11-20 | VAL | A:31 | A:9 | 0.0 | 0.0 | E | -136.4 | 124.9 | 0.0 | 0.0 | 0.0 |
HOH |
6.602 |
HG22 |
O |
||
| VAL | B:31 | B:9 | 0.0 | 0.0 | E | -135.6 | 125.5 | 0.0 | 0.0 | 0.0 |
HOH |
5.816 |
HG22 |
O |
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| 6i4s | 1 | P09622 | 99.79 | 0.0 |
X-RAY |
2019-11-20 | VAL | A:31 | A:9 | 0.0 | 0.0 | E | -135.0 | 125.3 | 0.0 | 0.0 | 0.0 |
HOH |
5.581 |
HG22 |
O |
||
| VAL | B:31 | B:9 | 0.0 | 0.0 | E | -134.4 | 126.3 | 0.0 | 0.0 | 0.0 |
HOH |
5.647 |
HG22 |
O |
|||||||||
| 6i4z | 1 | P09622 | 99.79 | 0.0 |
X-RAY |
2019-11-20 | VAL | A:31 | A:9 | 0.0 | 0.0 | E | -131.7 | 135.0 | 0.0 | 0.0 | 0.0 |
HOH |
5.489 |
HG23 |
O |
||
| VAL | B:31 | B:9 | 1.0 | 0.006 | E | -131.1 | 134.2 | 1.0 | 0.006 | 0.0 |
HOH |
6.289 |
HG22 |
O |
|||||||||
| VAL | C:31 | C:9 | 0.0 | 0.0 | E | -131.2 | 131.9 | NA | NA | NA | |||||||||||||
| VAL | D:31 | D:9 | 0.0 | 0.0 | E | -126.5 | 130.4 | NA | NA | NA | |||||||||||||
| VAL | E:31 | E:9 | 0.0 | 0.0 | E | -130.9 | 133.3 | NA | NA | NA | |||||||||||||
| VAL | F:31 | F:9 | 0.0 | 0.0 | E | -128.1 | 132.2 | NA | NA | NA | |||||||||||||
| VAL | G:31 | G:9 | 0.0 | 0.0 | E | -131.6 | 133.3 | NA | NA | NA | |||||||||||||
| VAL | H:31 | H:9 | 0.0 | 0.0 | E | -128.7 | 131.8 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p09622-f1 | 1 | P09622 | 100.0 | 0.0 | VAL | A:44 | A:44 | 0.0 | 0.0 | E | -134.6 | 126.4 | |