Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107542246 . C A CCDS5749.1:NM_000108.3:c.182gCc>gAc_NP_000099.2:p.61A>D Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 ALA A:47 A:26 18.0 0.157 H -69.8 -39.5 18.0 0.157 0.0 HOH
 4.206
 CB
 O
ALA B:47 B:26 17.0 0.148 H -54.4 -55.1 17.0 0.148 0.0
ALA C:47 C:26 18.0 0.157 H -60.9 -53.8 NA NA NA
ALA D:47 D:26 20.0 0.174 H -61.5 -42.5 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 ALA A:26 A:26 12.0 0.104 H -53.6 -57.9 12.0 0.104 0.0
ALA B:26 B:26 18.0 0.157 H -56.6 -44.1 18.0 0.157 0.0 HOH
 3.834
 O
 O
ALA C:26 C:26 17.0 0.148 H -54.4 -55.9 NA NA NA
ALA D:26 D:26 18.0 0.157 H -43.8 -52.6 NA NA NA
ALA E:26 E:26 19.0 0.165 H -55.6 -40.9 NA NA NA
ALA F:26 F:26 20.0 0.174 H -65.8 -36.3 NA NA NA
ALA G:26 G:26 6.0 0.052 H -63.7 -35.7 NA NA NA
ALA H:26 H:26 15.0 0.13 H -54.4 -60.7 NA NA NA
ALA I:26 I:26 22.0 0.191 H -68.0 -34.3 NA NA NA
ALA J:26 J:26 19.0 0.165 H -60.5 -39.1 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 ALA A:48 A:26 21.0 0.183 H -65.2 -40.6 21.0 0.183 0.0 HOH
 3.049
 HB1
 O
ALA B:48 B:26 22.0 0.191 H -65.0 -40.6 22.0 0.191 0.0 HOH
 3.591
 HB2
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ALA A:48 A:26 19.0 0.165 H -61.5 -41.5 19.0 0.165 0.0 1PE
HOH
 6.929
5.477
 C
O
 H121
O
ALA B:48 B:26 20.0 0.174 H -61.3 -42.5 20.0 0.174 0.0 HOH
 5.196
 O
 O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 ALA A:26 A:26 19.0 0.165 H -60.2 -43.6 19.0 0.165 0.0 HOH
 3.872
 CB
 O
ALA B:26 B:26 19.0 0.165 H -60.9 -46.4 19.0 0.165 0.0 HOH
 4.211
 CB
 O
ALA C:26 C:26 21.0 0.183 H -64.9 -35.7 NA NA NA
ALA D:26 D:26 17.0 0.148 H -60.0 -41.2 NA NA NA
ALA E:26 E:26 20.0 0.174 H -54.9 -40.2 NA NA NA
ALA F:26 F:26 17.0 0.148 H -64.0 -40.9 NA NA NA
ALA G:26 G:26 9.0 0.078 H -63.3 -34.8 NA NA NA
ALA H:26 H:26 16.0 0.139 H -55.8 -50.9 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 ALA A:26 A:26 17.0 0.148 H -63.5 -44.2 17.0 0.148 0.0 HOH
 3.310
 O
 O
ALA B:26 B:26 19.0 0.165 H -61.8 -44.9 19.0 0.165 0.0 HOH
 3.924
 CB
 O
ALA C:26 C:26 18.0 0.157 H -59.1 -50.8 NA NA NA
ALA D:26 D:26 17.0 0.148 H -63.8 -42.7 NA NA NA
ALA E:26 E:26 20.0 0.174 H -60.6 -43.6 NA NA NA
ALA F:26 F:26 18.0 0.157 H -65.1 -39.5 NA NA NA
ALA G:26 G:26 18.0 0.157 H -64.1 -41.4 NA NA NA
ALA H:26 H:26 20.0 0.174 H -58.6 -46.5 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 ALA A:26 A:26 19.0 0.165 H -56.8 -45.9 19.0 0.165 0.0 HOH
 5.522
 O
 O
ALA B:26 B:26 23.0 0.2 H -63.1 -30.6 23.0 0.2 0.0 HOH
 8.845
 C
 O
ALA C:26 C:26 18.0 0.157 H -57.9 -43.3 NA NA NA
ALA D:26 D:26 19.0 0.165 H -63.8 -39.2 NA NA NA
ALA E:26 E:26 19.0 0.165 H -61.3 -42.0 NA NA NA
ALA F:26 F:26 19.0 0.165 H -62.2 -39.8 NA NA NA
ALA G:26 G:26 18.0 0.157 H -54.4 -53.6 NA NA NA
ALA H:26 H:26 18.0 0.157 H -58.2 -39.4 NA NA NA
ALA I:26 I:26 18.0 0.157 H -64.3 -45.8 NA NA NA
ALA J:26 J:26 19.0 0.165 H -62.3 -44.6 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 ALA A:47 A:26 19.0 0.165 H -64.5 -40.7 19.0 0.165 0.0
ALA B:47 B:26 20.0 0.174 H -63.3 -40.7 20.0 0.174 0.0
ALA C:47 C:26 19.0 0.165 H -64.5 -40.7 NA NA NA
ALA D:47 D:26 18.0 0.157 H -65.9 -41.7 NA NA NA
ALA E:47 E:26 21.0 0.183 H -64.3 -40.9 NA NA NA
ALA F:47 F:26 19.0 0.165 H -63.9 -40.0 NA NA NA
ALA G:47 G:26 17.0 0.148 H -63.2 -39.8 NA NA NA
ALA H:47 H:26 21.0 0.183 H -63.4 -40.3 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ALA A:48 A:26 19.0 0.165 H -64.7 -40.6 19.0 0.165 0.0 1PE
HOH
 6.845
6.021
 C
O
 H161
O
ALA B:48 B:26 21.0 0.183 H -63.8 -40.9 21.0 0.183 0.0 HOH
 2.820
 HA
 O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 ALA A:48 A:26 21.0 0.183 H -63.0 -39.7 21.0 0.183 0.0 HOH
 4.084
 CB
 O
ALA B:48 B:26 21.0 0.183 H -62.1 -42.3 21.0 0.183 0.0 HOH
 2.726
 O
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 ALA A:48 A:26 19.0 0.165 H -62.9 -41.9 19.0 0.165 0.0 HOH
 3.160
 O
 O
ALA B:48 B:26 18.0 0.157 H -61.9 -44.7 18.0 0.157 0.0 HOH
 3.118
 O
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ALA A:48 A:26 19.0 0.165 H -62.8 -39.5 19.0 0.165 0.0 HOH
 2.904
 HA
 O
ALA B:48 B:26 21.0 0.183 H -63.4 -39.4 21.0 0.183 0.0 HOH
 2.925
 HA
 O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ALA A:48 A:26 20.0 0.174 H -62.8 -41.9 20.0 0.174 0.0 HOH
 2.950
 HA
 O
ALA B:48 B:26 21.0 0.183 H -63.4 -42.8 21.0 0.183 0.0 HOH
 3.426
 HB2
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ALA A:48 A:26 19.0 0.165 H -63.4 -43.1 19.0 0.165 0.0 HOH
 2.978
 HA
 O
ALA B:48 B:26 19.0 0.165 H -64.2 -44.0 19.0 0.165 0.0 HOH
 2.940
 HA
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ALA A:48 A:26 20.0 0.174 H -59.7 -42.8 20.0 0.174 0.0 HOH
 3.425
 HB2
 O
ALA B:48 B:26 22.0 0.191 H -58.8 -41.8 22.0 0.191 0.0 HOH
 4.838
 O
 O
ALA C:48 C:26 20.0 0.174 H -61.5 -41.3 NA NA NA
ALA D:48 D:26 19.0 0.165 H -59.8 -43.1 NA NA NA
ALA E:48 E:26 21.0 0.183 H -59.8 -42.8 NA NA NA
ALA F:48 F:26 22.0 0.191 H -59.0 -43.1 NA NA NA
ALA G:48 G:26 25.0 0.217 H -61.1 -42.5 NA NA NA
ALA H:48 H:26 22.0 0.191 H -60.9 -42.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 ALA A:61 A:61 22.0 0.191 H -64.9 -38.5