Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107542249 . A C CCDS5749.1:NM_000108.3:c.185cAg>cCg_NP_000099.2:p.62Q>P Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 GLN A:48 A:27 112.0 0.622 H -67.4 -20.9 16.0 0.089 0.533 B:P09622:0.533
 HOH
 2.860
 OE1
 O
GLN B:48 B:27 116.0 0.644 H -53.5 -30.9 25.0 0.139 0.505 A:P09622:0.506
 HOH
 9.241
 NE2
 O
GLN C:48 C:27 121.0 0.672 H -55.8 -28.6 NA NA NA
GLN D:48 D:27 112.0 0.622 H -68.0 -20.3 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 GLN A:27 A:27 118.0 0.656 H -50.7 -24.8 30.0 0.167 0.489 B:P09622:0.489
GLN B:27 B:27 114.0 0.633 H -74.1 -11.8 30.0 0.167 0.466 A:P09622:0.467
 HOH
 3.193
 CA
 O
GLN C:27 C:27 115.0 0.639 H -55.6 -21.5 NA NA NA
GLN D:27 D:27 115.0 0.639 H -66.2 -27.1 NA NA NA
GLN E:27 E:27 115.0 0.639 H -72.1 -13.2 NA NA NA
GLN F:27 F:27 107.0 0.594 H -72.6 -10.1 NA NA NA
GLN G:27 G:27 114.0 0.633 H -75.9 -13.3 NA NA NA
GLN H:27 H:27 112.0 0.622 H -47.9 -20.2 NA NA NA
GLN I:27 I:27 117.0 0.65 T -58.3 -30.2 NA NA NA
GLN J:27 J:27 115.0 0.639 T -66.4 -9.7 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 GLN A:49 A:27 115.0 0.639 H -64.5 -29.3 30.0 0.167 0.472 B:P09622:0.472
 HOH
 2.696
 OE1
 O
GLN B:49 B:27 114.0 0.633 H -64.8 -27.5 24.0 0.133 0.5 A:P09622:0.5
 HOH
 2.727
 OE1
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:49 A:27 111.0 0.617 H -64.5 -28.5 37.0 0.206 0.411 B:P09622:0.411
 1PE
HOH
 2.961
2.789
 HB3
O
 H121
O
GLN B:49 B:27 108.0 0.6 H -64.2 -27.1 23.0 0.128 0.472 A:P09622:0.472
 HOH
 2.630
 OE1
 O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLN A:27 A:27 109.0 0.606 H -67.8 -19.3 22.0 0.122 0.484 B:P09622:0.483
 HOH
 2.799
 O
 O
GLN B:27 B:27 112.0 0.622 T -63.1 -11.3 24.0 0.133 0.489 A:P09622:0.489
 HOH
 2.992
 OE1
 O
GLN C:27 C:27 112.0 0.622 T -70.0 -16.1 NA NA NA
GLN D:27 D:27 110.0 0.611 H -66.1 -26.7 NA NA NA
GLN E:27 E:27 110.0 0.611 H -71.7 -14.7 NA NA NA
GLN F:27 F:27 111.0 0.617 H -63.8 -26.8 NA NA NA
GLN G:27 G:27 111.0 0.617 H -73.4 -22.7 NA NA NA
GLN H:27 H:27 115.0 0.639 H -59.8 -17.6 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLN A:27 A:27 116.0 0.644 H -63.8 -26.7 22.0 0.122 0.522 B:P09622:0.522
 HOH
 2.674
 O
 O
GLN B:27 B:27 112.0 0.622 H -66.0 -18.5 26.0 0.144 0.478 A:P09622:0.478
 HOH
 2.627
 OE1
 O
GLN C:27 C:27 111.0 0.617 H -61.9 -19.4 NA NA NA
GLN D:27 D:27 115.0 0.639 H -61.4 -31.5 NA NA NA
GLN E:27 E:27 117.0 0.65 H -63.0 -25.7 NA NA NA
GLN F:27 F:27 111.0 0.617 H -62.8 -32.2 NA NA NA
GLN G:27 G:27 111.0 0.617 H -65.3 -24.7 NA NA NA
GLN H:27 H:27 113.0 0.628 H -60.2 -24.9 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 GLN A:27 A:27 110.0 0.611 H -63.2 -13.3 26.0 0.144 0.467 B:P09622:0.467
 HOH
 2.681
 O
 O
GLN B:27 B:27 103.0 0.572 T -74.3 -5.4 23.0 0.128 0.444 A:P09622:0.444
 HOH
 2.729
 OE1
 O
GLN C:27 C:27 111.0 0.617 H -64.0 -25.7 NA NA NA
GLN D:27 D:27 115.0 0.639 H -67.3 -25.8 NA NA NA
GLN E:27 E:27 110.0 0.611 H -65.4 -32.6 NA NA NA
GLN F:27 F:27 115.0 0.639 H -69.3 -18.5 NA NA NA
GLN G:27 G:27 112.0 0.622 H -58.5 -23.0 NA NA NA
GLN H:27 H:27 111.0 0.617 H -70.0 -22.4 NA NA NA
GLN I:27 I:27 114.0 0.633 H -64.5 -19.3 NA NA NA
GLN J:27 J:27 113.0 0.628 H -62.8 -20.5 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 GLN A:48 A:27 115.0 0.639 H -65.2 -22.3 31.0 0.172 0.467 B:P09622:0.467
GLN B:48 B:27 109.0 0.606 H -65.5 -22.6 30.0 0.167 0.439 A:P09622:0.439
 HOH
 9.614
 O
 O
GLN C:48 C:27 109.0 0.606 H -64.8 -22.5 NA NA NA
GLN D:48 D:27 108.0 0.6 H -65.2 -21.7 NA NA NA
GLN E:48 E:27 113.0 0.628 H -65.0 -21.1 NA NA NA
GLN F:48 F:27 115.0 0.639 H -64.6 -22.1 NA NA NA
GLN G:48 G:27 107.0 0.594 H -66.6 -23.3 NA NA NA
GLN H:48 H:27 111.0 0.617 H -65.2 -23.4 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:49 A:27 115.0 0.639 H -63.5 -29.1 39.0 0.217 0.422 B:P09622:0.422
 1PE
HOH
 2.531
2.703
 HB3
OE1
 H161
O
GLN B:49 B:27 112.0 0.622 H -64.3 -27.4 21.0 0.117 0.505 A:P09622:0.506
 HOH
 2.713
 OE1
 O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 GLN A:49 A:27 111.0 0.617 H -67.8 -23.9 23.0 0.128 0.489 B:P09622:0.489
 HOH
 2.693
 OE1
 O
GLN B:49 B:27 109.0 0.606 H -65.7 -29.1 23.0 0.128 0.478 A:P09622:0.478
 HOH
 2.771
 OE1
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 GLN A:49 A:27 110.0 0.611 H -65.0 -28.1 21.0 0.117 0.494 B:P09622:0.494
 HOH
 2.678
 OE1
 O
GLN B:49 B:27 114.0 0.633 H -61.5 -31.2 23.0 0.128 0.505 A:P09622:0.506
 HOH
 2.766
 OE1
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:49 A:27 111.0 0.617 H -67.5 -25.2 23.0 0.128 0.489 B:P09622:0.489
 HOH
 2.694
 O
 O
GLN B:49 B:27 113.0 0.628 H -67.4 -24.7 21.0 0.117 0.511 A:P09622:0.511
 HOH
 2.666
 HG2
 O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:49 A:27 113.0 0.628 H -62.9 -29.0 26.0 0.144 0.484 B:P09622:0.483
 HOH
 2.713
 OE1
 O
GLN B:49 B:27 113.0 0.628 H -63.1 -27.9 23.0 0.128 0.5 A:P09622:0.5
 HOH
 2.628
 O
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:49 A:27 111.0 0.617 H -61.7 -27.9 21.0 0.117 0.5 B:P09622:0.5
 HOH
 2.597
 OE1
 O
GLN B:49 B:27 112.0 0.622 H -61.8 -27.4 23.0 0.128 0.494 A:P09622:0.494
 HOH
 2.722
 HG2
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:49 A:27 114.0 0.633 H -65.7 -26.8 24.0 0.133 0.5 B:P09622:0.5
 HOH
 2.721
 HE21
 O
GLN B:49 B:27 116.0 0.644 H -65.0 -25.7 16.0 0.089 0.555 A:P09622:0.556
 HOH
 1.928
 HE22
 O
GLN C:49 C:27 114.0 0.633 H -65.5 -27.1 NA NA NA
GLN D:49 D:27 114.0 0.633 H -67.1 -25.2 NA NA NA
GLN E:49 E:27 117.0 0.65 H -67.7 -28.4 NA NA NA
GLN F:49 F:27 117.0 0.65 H -66.9 -26.5 NA NA NA
GLN G:49 G:27 121.0 0.672 H -68.9 -30.5 NA NA NA
GLN H:49 H:27 112.0 0.622 H -67.6 -26.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 GLN A:62 A:62 117.0 0.65 H -64.3 -30.6