Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107542830 . C A CCDS5749.1:NM_000108.3:c.259Cct>Act_NP_000099.2:p.87P>T Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 PRO A:73 A:52 3.0 0.021 H -66.7 -32.7 3.0 0.021 0.0 FAD
HOH
 6.632
3.823
 CD
CB
 C6
O
PRO B:73 B:52 4.0 0.028 H -71.2 -27.8 4.0 0.028 0.0 FAD
HOH
 6.688
7.413
 CD
O
 C6
O
PRO C:73 C:52 4.0 0.028 H -60.4 -37.4 NA NA NA
PRO D:73 D:52 3.0 0.021 H -65.7 -38.6 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 PRO A:52 A:52 3.0 0.021 H -59.5 -50.3 3.0 0.021 0.0 FAD
HOH
 7.322
7.220
 CD
O
 C6
O
PRO B:52 B:52 3.0 0.021 H -56.3 -34.6 3.0 0.021 0.0 FAD
HOH
 7.189
5.805
 CD
CG
 C6
O
PRO C:52 C:52 6.0 0.041 H -56.8 -48.2 NA NA NA
PRO D:52 D:52 2.0 0.014 H -47.8 -46.0 NA NA NA
PRO E:52 E:52 4.0 0.028 H -46.9 -43.0 NA NA NA
PRO F:52 F:52 6.0 0.041 H -58.1 -45.0 NA NA NA
PRO G:52 G:52 0.0 0.0 H -51.1 -44.8 NA NA NA
PRO H:52 H:52 4.0 0.028 H -53.6 -50.2 NA NA NA
PRO I:52 I:52 4.0 0.028 H -63.4 -39.4 NA NA NA
PRO J:52 J:52 3.0 0.021 H -51.2 -58.1 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 PRO A:74 A:52 4.0 0.028 H -61.8 -33.6 4.0 0.028 0.0 FAD
BTB
HOH
 4.604
9.195
2.770
 HG2
HG3
HB3
 HM71
H12
O
PRO B:74 B:52 4.0 0.028 H -61.3 -32.8 4.0 0.028 0.0 FAD
BTB
HOH
 4.487
9.047
3.131
 HG2
HG3
HB3
 HM71
H11
O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 PRO A:74 A:52 4.0 0.028 H -60.0 -34.9 4.0 0.028 0.0 FAD
HOH
 5.144
5.012
 HG2
HB3
 HM71
O
PRO B:74 B:52 4.0 0.028 H -59.3 -35.4 4.0 0.028 0.0 FAD
HOH
 4.953
3.170
 HG2
HB3
 HM71
O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 PRO A:52 A:52 2.0 0.014 H -57.7 -33.9 2.0 0.014 0.0 FAD
HOH
 6.473
3.676
 CG
CB
 C7M
O
PRO B:52 B:52 3.0 0.021 H -59.5 -35.3 3.0 0.021 0.0 FAD
HOH
 6.326
3.236
 CG
CB
 C7M
O
PRO C:52 C:52 4.0 0.028 H -59.9 -34.0 NA NA NA
PRO D:52 D:52 2.0 0.014 H -61.8 -32.5 NA NA NA
PRO E:52 E:52 4.0 0.028 H -53.3 -48.3 NA NA NA
PRO F:52 F:52 3.0 0.021 H -64.0 -35.9 NA NA NA
PRO G:52 G:52 4.0 0.028 H -63.9 -34.2 NA NA NA
PRO H:52 H:52 4.0 0.028 H -57.4 -39.1 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 PRO A:52 A:52 3.0 0.021 H -66.3 -35.5 3.0 0.021 0.0 FAD
NAI
HOH
 6.454
9.775
3.656
 CG
C
CB
 C7M
C4N
O
PRO B:52 B:52 3.0 0.021 H -61.7 -38.8 3.0 0.021 0.0 FAD
NAI
HOH
 6.011
9.758
3.587
 CG
CG
CB
 C7M
C5N
O
PRO C:52 C:52 3.0 0.021 H -61.9 -40.6 NA NA NA
PRO D:52 D:52 4.0 0.028 H -61.0 -36.7 NA NA NA
PRO E:52 E:52 4.0 0.028 H -66.4 -40.5 NA NA NA
PRO F:52 F:52 4.0 0.028 H -66.2 -32.5 NA NA NA
PRO G:52 G:52 3.0 0.021 H -69.8 -33.8 NA NA NA
PRO H:52 H:52 3.0 0.021 H -64.8 -38.5 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 PRO A:52 A:52 3.0 0.021 H -53.1 -43.3 3.0 0.021 0.0 FAD
HOH
 6.811
3.499
 CD
CG
 C6
O
PRO B:52 B:52 4.0 0.028 H -60.6 -34.3 4.0 0.028 0.0 FAD
HOH
 6.176
6.978
 CG
CG
 C7M
O
PRO C:52 C:52 4.0 0.028 H -66.7 -32.9 NA NA NA
PRO D:52 D:52 4.0 0.028 H -66.0 -34.0 NA NA NA
PRO E:52 E:52 4.0 0.028 H -56.8 -42.1 NA NA NA
PRO F:52 F:52 5.0 0.034 H -64.5 -36.0 NA NA NA
PRO G:52 G:52 4.0 0.028 H -63.5 -32.4 NA NA NA
PRO H:52 H:52 4.0 0.028 H -62.9 -33.7 NA NA NA
PRO I:52 I:52 3.0 0.021 H -56.5 -43.7 NA NA NA
PRO J:52 J:52 2.0 0.014 H -57.8 -46.8 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 PRO A:73 A:52 4.0 0.028 H -63.3 -36.7 4.0 0.028 0.0 FAD
HOH
 4.429
4.949
 HG2
HB3
 HM73
O
PRO B:73 B:52 4.0 0.028 H -62.5 -37.7 4.0 0.028 0.0 FAD
HOH
 5.008
3.019
 HG2
HB3
 HM71
O
PRO C:73 C:52 4.0 0.028 H -63.0 -37.5 NA NA NA
PRO D:73 D:52 4.0 0.028 H -63.9 -37.7 NA NA NA
PRO E:73 E:52 4.0 0.028 H -63.7 -37.3 NA NA NA
PRO F:73 F:52 3.0 0.021 H -62.1 -39.2 NA NA NA
PRO G:73 G:52 4.0 0.028 H -62.7 -37.7 NA NA NA
PRO H:73 H:52 4.0 0.028 H -64.0 -38.6 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 PRO A:74 A:52 3.0 0.021 H -60.3 -35.8 3.0 0.021 0.0 FAD
HOH
 5.052
2.992
 HG2
HB3
 HM71
O
PRO B:74 B:52 4.0 0.028 H -60.3 -35.9 4.0 0.028 0.0 FAD
HOH
 5.137
3.198
 HG2
HB3
 HM71
O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 PRO A:74 A:52 4.0 0.028 H -62.1 -31.1 4.0 0.028 0.0 FAD
HOH
 6.610
3.573
 CG
CB
 C7M
O
PRO B:74 B:52 4.0 0.028 H -65.3 -29.6 4.0 0.028 0.0 FAD
HOH
 6.571
3.510
 CG
CB
 C7M
O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 PRO A:74 A:52 4.0 0.028 H -60.6 -37.9 4.0 0.028 0.0 FAD
HOH
 6.617
3.415
 CG
CB
 C7M
O
PRO B:74 B:52 4.0 0.028 H -59.8 -37.2 4.0 0.028 0.0 FAD
HOH
 6.567
3.626
 CG
CB
 C7M
O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 PRO A:74 A:52 4.0 0.028 H -62.2 -34.8 4.0 0.028 0.0 FAD
BTB
HOH
 4.840
9.249
2.816
 HG2
HG3
HB3
 HM71
H11
O
PRO B:74 B:52 5.0 0.034 H -62.2 -35.2 5.0 0.034 0.0 FAD
BTB
HOH
 4.976
9.243
2.848
 HG2
HG3
HB3
 HM72
H41
O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 PRO A:74 A:52 5.0 0.034 H -62.0 -35.1 5.0 0.034 0.0 FAD
BTB
HOH
 4.977
9.153
2.683
 HG2
HG3
HB3
 HM71
H32
O
PRO B:74 B:52 4.0 0.028 H -62.9 -35.5 4.0 0.028 0.0 FAD
BTB
HOH
 5.025
9.143
2.919
 HG2
HG3
HB3
 HM71
H41
O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 PRO A:74 A:52 4.0 0.028 H -62.2 -33.5 4.0 0.028 0.0 FAD
HOH
 5.015
3.216
 HG2
HB2
 HM71
O
PRO B:74 B:52 4.0 0.028 H -63.8 -35.3 4.0 0.028 0.0 FAD
HOH
 5.033
2.781
 HG2
HB3
 HM71
O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 PRO A:74 A:52 2.0 0.014 H -65.0 -33.7 2.0 0.014 0.0 FAD
HOH
 5.056
6.755
 HG2
HG2
 HM71
O
PRO B:74 B:52 3.0 0.021 H -65.4 -33.3 3.0 0.021 0.0 FAD
HOH
 4.662
7.323
 HG2
O
 HM72
O
PRO C:74 C:52 2.0 0.014 H -65.4 -33.1 NA NA NA
PRO D:74 D:52 2.0 0.014 H -64.6 -35.4 NA NA NA
PRO E:74 E:52 3.0 0.021 H -63.9 -32.8 NA NA NA
PRO F:74 F:52 4.0 0.028 H -64.1 -35.7 NA NA NA
PRO G:74 G:52 3.0 0.021 H -63.7 -33.1 NA NA NA
PRO H:74 H:52 5.0 0.034 H -64.8 -36.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 PRO A:87 A:87 2.0 0.014 H -64.6 -35.3