Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107545471 . G A CCDS5749.1:NM_000108.3:c.406Ggt>Agt_NP_000099.2:p.136G>S Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 GLY A:122 A:101 41.0 0.547 H -57.5 -35.2 41.0 0.547 0.0 HOH
 3.391
 N
 O
GLY B:122 B:101 41.0 0.547 H -58.4 -35.6 41.0 0.547 0.0 HOH
 8.625
 N
 O
GLY C:122 C:101 41.0 0.547 H -59.3 -34.7 NA NA NA
GLY D:122 D:101 43.0 0.573 H -54.7 -28.5 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 GLY A:101 A:101 37.0 0.493 H -60.9 -46.4 37.0 0.493 0.0 HOH
 5.256
 O
 O
GLY B:101 B:101 37.0 0.493 H -55.1 -57.0 37.0 0.493 0.0 HOH
 7.961
 N
 O
GLY C:101 C:101 38.0 0.507 H -62.2 -30.5 NA NA NA
GLY D:101 D:101 45.0 0.6 H -66.0 -36.3 NA NA NA
GLY E:101 E:101 41.0 0.547 H -56.5 -42.3 NA NA NA
GLY F:101 F:101 41.0 0.547 H -84.6 -38.0 NA NA NA
GLY G:101 G:101 34.0 0.453 H -55.2 -54.4 NA NA NA
GLY H:101 H:101 38.0 0.507 H -61.5 -45.9 NA NA NA
GLY I:101 I:101 40.0 0.533 H -65.6 -26.8 NA NA NA
GLY J:101 J:101 36.0 0.48 H -54.5 -46.4 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 GLY A:123 A:101 40.0 0.533 H -63.1 -33.5 40.0 0.533 0.0 HOH
 4.039
 HA2
 O
GLY B:123 B:101 41.0 0.547 H -61.5 -32.5 41.0 0.547 0.0 HOH
 4.324
 HA2
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:123 A:101 41.0 0.547 H -62.8 -33.4 41.0 0.547 0.0 HOH
 3.977
 HA2
 O
GLY B:123 B:101 40.0 0.533 H -63.2 -32.2 40.0 0.533 0.0 HOH
 4.214
 HA2
 O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLY A:101 A:101 29.0 0.387 H -64.4 -29.8 29.0 0.387 0.0 HOH
 3.306
 N
 O
GLY B:101 B:101 37.0 0.493 H -71.6 -29.5 37.0 0.493 0.0 HOH
 3.659
 N
 O
GLY C:101 C:101 40.0 0.533 H -69.9 -30.7 NA NA NA
GLY D:101 D:101 39.0 0.52 H -68.2 -21.1 NA NA NA
GLY E:101 E:101 40.0 0.533 H -65.7 -32.4 NA NA NA
GLY F:101 F:101 29.0 0.387 H -62.4 -49.8 NA NA NA
GLY G:101 G:101 29.0 0.387 H -62.6 -46.4 NA NA NA
GLY H:101 H:101 38.0 0.507 H -57.9 -38.6 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLY A:101 A:101 41.0 0.547 H -72.2 -27.3 41.0 0.547 0.0 HOH
 3.533
 N
 O
GLY B:101 B:101 37.0 0.493 H -65.7 -38.9 37.0 0.493 0.0 HOH
 3.590
 N
 O
GLY C:101 C:101 39.0 0.52 H -65.0 -33.7 NA NA NA
GLY D:101 D:101 40.0 0.533 H -69.9 -28.5 NA NA NA
GLY E:101 E:101 40.0 0.533 H -62.1 -33.9 NA NA NA
GLY F:101 F:101 38.0 0.507 H -67.6 -36.0 NA NA NA
GLY G:101 G:101 43.0 0.573 H -67.0 -35.6 NA NA NA
GLY H:101 H:101 41.0 0.547 H -59.3 -39.2 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 GLY A:101 A:101 40.0 0.533 H -58.5 -35.3 40.0 0.533 0.0 HOH
 4.468
 N
 O
GLY B:101 B:101 40.0 0.533 H -58.6 -30.3 40.0 0.533 0.0 HOH
 6.666
 C
 O
GLY C:101 C:101 40.0 0.533 H -63.9 -34.6 NA NA NA
GLY D:101 D:101 40.0 0.533 H -60.6 -31.5 NA NA NA
GLY E:101 E:101 39.0 0.52 H -63.4 -36.2 NA NA NA
GLY F:101 F:101 39.0 0.52 H -67.6 -36.0 NA NA NA
GLY G:101 G:101 41.0 0.547 H -62.0 -31.2 NA NA NA
GLY H:101 H:101 39.0 0.52 H -67.4 -36.0 NA NA NA
GLY I:101 I:101 39.0 0.52 H -67.1 -41.2 NA NA NA
GLY J:101 J:101 39.0 0.52 H -68.5 -31.0 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 GLY A:122 A:101 42.0 0.56 H -60.5 -36.0 42.0 0.56 0.0 HOH
 7.666
 H
 O
GLY B:122 B:101 40.0 0.533 H -61.9 -36.3 40.0 0.533 0.0
GLY C:122 C:101 41.0 0.547 H -63.0 -37.6 NA NA NA
GLY D:122 D:101 39.0 0.52 H -62.5 -35.8 NA NA NA
GLY E:122 E:101 39.0 0.52 H -62.3 -37.0 NA NA NA
GLY F:122 F:101 41.0 0.547 H -61.3 -34.7 NA NA NA
GLY G:122 G:101 41.0 0.547 H -63.4 -36.5 NA NA NA
GLY H:122 H:101 38.0 0.507 H -62.0 -36.8 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:123 A:101 40.0 0.533 H -65.5 -30.3 40.0 0.533 0.0 HOH
 2.935
 O
 O
GLY B:123 B:101 43.0 0.573 H -66.2 -29.0 43.0 0.573 0.0 HOH
 4.221
 HA2
 O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 GLY A:123 A:101 30.0 0.4 H -68.4 -32.6 30.0 0.4 0.0 HOH
 4.250
 N
 O
GLY B:123 B:101 42.0 0.56 H -61.9 -34.9 42.0 0.56 0.0 HOH
 3.088
 O
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 GLY A:123 A:101 41.0 0.547 H -54.5 -38.6 41.0 0.547 0.0 HOH
 3.362
 N
 O
GLY B:123 B:101 40.0 0.533 H -58.3 -39.0 40.0 0.533 0.0 HOH
 2.927
 O
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:123 A:101 40.0 0.533 H -63.1 -32.4 40.0 0.533 0.0 HOH
 2.747
 O
 O
GLY B:123 B:101 41.0 0.547 H -62.8 -32.1 41.0 0.547 0.0 HOH
 2.747
 O
 O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:123 A:101 41.0 0.547 H -59.4 -34.7 41.0 0.547 0.0 HOH
 3.265
 HA3
 O
GLY B:123 B:101 42.0 0.56 H -59.1 -33.4 42.0 0.56 0.0 HOH
 2.755
 O
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:123 A:101 26.0 0.347 H -61.2 -32.5 26.0 0.347 0.0 HOH
 2.977
 O
 O
GLY B:123 B:101 42.0 0.56 H -60.8 -33.6 42.0 0.56 0.0 HOH
 2.854
 HA2
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:123 A:101 40.0 0.533 H -63.8 -31.5 40.0 0.533 0.0 SO4
HOH
 5.904
3.322
 O
O
 O3
O
GLY B:123 B:101 41.0 0.547 H -65.0 -28.0 41.0 0.547 0.0 HOH
 3.576
 HA2
 O
GLY C:123 C:101 39.0 0.52 H -62.9 -30.6 NA NA NA
GLY D:123 D:101 42.0 0.56 H -64.4 -28.3 NA NA NA
GLY E:123 E:101 33.0 0.44 H -65.6 -28.6 NA NA NA
GLY F:123 F:101 40.0 0.533 H -65.8 -29.2 NA NA NA
GLY G:123 G:101 38.0 0.507 H -66.9 -28.9 NA NA NA
GLY H:123 H:101 42.0 0.56 H -65.1 -29.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 GLY A:136 A:136 40.0 0.533 H -61.7 -37.0