Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107556054 . G A CCDS5749.1:NM_000108.3:c.788cGc>cAc_NP_000099.2:p.263R>H Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 ARG A:249 A:228 150.0 0.667 H -58.2 -46.0 150.0 0.667 0.0 NHE
HOH
 4.342
3.228
 NH1
NH1
 O3
O
ARG B:249 B:228 154.0 0.684 H -45.5 -48.9 154.0 0.684 0.0 NHE
HOH
 5.198
6.575
 CD
N
 O3
O
ARG C:249 C:228 156.0 0.693 H -52.5 -51.6 NA NA NA
ARG D:249 D:228 139.0 0.618 H -45.0 -55.4 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 ARG A:228 A:228 159.0 0.707 H -50.8 -42.4 159.0 0.707 0.0 HOH
 5.973
 N
 O
ARG B:228 B:228 128.0 0.569 H -36.1 -40.8 128.0 0.569 0.0 HOH
 3.143
 CG
 O
ARG C:228 C:228 114.0 0.507 H -58.4 -47.1 NA NA NA
ARG D:228 D:228 128.0 0.569 H -46.6 -41.8 NA NA NA
ARG E:228 E:228 152.0 0.676 H -68.0 -36.9 NA NA NA
ARG F:228 F:228 111.0 0.493 H -68.2 -28.0 NA NA NA
ARG G:228 G:228 115.0 0.511 H -68.4 -32.7 NA NA NA
ARG H:228 H:228 124.0 0.551 H -64.7 -33.5 NA NA NA
ARG I:228 I:228 105.0 0.467 H -70.7 -36.2 NA NA NA
ARG J:228 J:228 108.0 0.48 H -61.0 -46.8 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 ARG A:250 A:228 159.0 0.707 H -60.6 -39.2 159.0 0.707 0.0 HOH
 2.939
 HD3
 O
ARG B:250 B:228 163.0 0.724 H -62.6 -39.0 163.0 0.724 0.0 HOH
 2.750
 HB3
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ARG A:250 A:228 120.0 0.533 H -58.0 -40.0 120.0 0.533 0.0 HOH
 2.076
 HH21
 O
ARG B:250 B:228 103.0 0.458 H -57.8 -41.6 103.0 0.458 0.0 HOH
 2.424
 HH22
 O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 ARG A:228 A:228 152.0 0.676 H -53.0 -48.3 152.0 0.676 0.0 HOH
 6.483
 N
 O
ARG B:228 B:228 117.0 0.52 H -58.8 -42.6 117.0 0.52 0.0 HOH
 3.021
 O
 O
ARG C:228 C:228 116.0 0.516 H -59.7 -37.4 NA NA NA
ARG D:228 D:228 126.0 0.56 H -55.8 -41.0 NA NA NA
ARG E:228 E:228 113.0 0.502 H -53.5 -55.4 NA NA NA
ARG F:228 F:228 142.0 0.631 H -65.0 -42.7 NA NA NA
ARG G:228 G:228 156.0 0.693 H -62.1 -41.8 NA NA NA
ARG H:228 H:228 146.0 0.649 H -57.6 -50.5 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 ARG A:228 A:228 133.0 0.591 H -61.9 -38.5 133.0 0.591 0.0 HOH
 4.755
 O
 O
ARG B:228 B:228 109.0 0.484 H -64.8 -37.9 109.0 0.484 0.0 HOH
 2.838
 O
 O
ARG C:228 C:228 126.0 0.56 H -58.5 -45.2 NA NA NA
ARG D:228 D:228 150.0 0.667 H -53.7 -47.1 NA NA NA
ARG E:228 E:228 140.0 0.622 H -59.6 -42.9 NA NA NA
ARG F:228 F:228 141.0 0.627 H -63.7 -41.7 NA NA NA
ARG G:228 G:228 192.0 0.853 H -64.2 -39.5 NA NA NA
ARG H:228 H:228 124.0 0.551 H -55.2 -45.6 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 ARG A:228 A:228 117.0 0.52 H -58.1 -42.3 117.0 0.52 0.0 HOH
 2.798
 O
 O
ARG B:228 B:228 114.0 0.507 H -56.7 -39.3 114.0 0.507 0.0 HOH
 3.003
 O
 O
ARG C:228 C:228 131.0 0.582 H -62.1 -44.2 NA NA NA
ARG D:228 D:228 121.0 0.538 H -61.6 -43.3 NA NA NA
ARG E:228 E:228 144.0 0.64 H -58.1 -48.1 NA NA NA
ARG F:228 F:228 130.0 0.578 H -60.7 -38.5 NA NA NA
ARG G:228 G:228 129.0 0.573 H -57.8 -41.8 NA NA NA
ARG H:228 H:228 113.0 0.502 H -60.2 -39.0 NA NA NA
ARG I:228 I:228 135.0 0.6 H -64.0 -39.0 NA NA NA
ARG J:228 J:228 144.0 0.64 H -58.0 -44.1 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 ARG A:249 A:228 106.0 0.471 H -55.1 -48.4 106.0 0.471 0.0 HOH
 2.507
 HH22
 O
ARG B:249 B:228 112.0 0.498 H -57.9 -44.4 112.0 0.498 0.0 HOH
 2.104
 HE
 O
ARG C:249 C:228 106.0 0.471 H -56.8 -45.5 NA NA NA
ARG D:249 D:228 127.0 0.564 H -58.4 -44.1 NA NA NA
ARG E:249 E:228 126.0 0.56 H -60.9 -41.4 NA NA NA
ARG F:249 F:228 124.0 0.551 H -58.6 -46.0 NA NA NA
ARG G:249 G:228 164.0 0.729 H -60.5 -45.4 NA NA NA
ARG H:249 H:228 142.0 0.631 H -58.6 -44.2 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ARG A:250 A:228 155.0 0.689 H -64.2 -34.5 155.0 0.689 0.0 HOH
 2.337
 HH12
 O
ARG B:250 B:228 99.0 0.44 H -60.9 -40.2 99.0 0.44 0.0 HOH
 2.541
 HH12
 O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 ARG A:250 A:228 167.0 0.742 H -56.0 -42.6 167.0 0.742 0.0 HOH
 3.247
 CD
 O
ARG B:250 B:228 118.0 0.524 H -59.2 -42.9 118.0 0.524 0.0 HOH
 3.631
 CB
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 ARG A:250 A:228 132.0 0.587 H -59.9 -40.7 132.0 0.587 0.0 HOH
 2.746
 O
 O
ARG B:250 B:228 150.0 0.667 H -54.6 -44.9 150.0 0.667 0.0 HOH
 3.556
 CB
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ARG A:250 A:228 195.0 0.867 H -62.7 -39.8 195.0 0.867 0.0 HOH
 2.504
 HG3
 O
ARG B:250 B:228 114.0 0.507 H -63.2 -38.8 114.0 0.507 0.0 HOH
 4.725
 O
 O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ARG A:250 A:228 109.0 0.484 H -60.4 -42.2 109.0 0.484 0.0 HOH
 9.835
 O
 O
ARG B:250 B:228 95.0 0.422 H -61.3 -41.3 95.0 0.422 0.0 HOH
 5.290
 O
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ARG A:250 A:228 151.0 0.671 H -58.2 -41.8 151.0 0.671 0.0 HOH
 2.500
 HG2
 O
ARG B:250 B:228 128.0 0.569 H -60.9 -41.3 128.0 0.569 0.0 HOH
 2.367
 HG3
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ARG A:250 A:228 170.0 0.756 H -63.9 -41.4 170.0 0.756 0.0 HOH
 6.246
 H
 O
ARG B:250 B:228 178.0 0.791 H -62.2 -39.0 178.0 0.791 0.0 HOH
 6.651
 HH22
 O
ARG C:250 C:228 97.0 0.431 H -62.3 -44.1 NA NA NA
ARG D:250 D:228 127.0 0.564 H -64.4 -37.9 NA NA NA
ARG E:250 E:228 185.0 0.822 H -67.4 -37.2 NA NA NA
ARG F:250 F:228 162.0 0.72 H -64.6 -36.2 NA NA NA
ARG G:250 G:228 151.0 0.671 H -64.3 -38.6 NA NA NA
ARG H:250 H:228 165.0 0.733 H -63.4 -40.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 ARG A:263 A:263 121.0 0.538 H -60.4 -39.8