Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107556062 . C A CCDS5749.1:NM_000108.3:c.796Caa>Aaa_NP_000099.2:p.266Q>K Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 GLN A:252 A:231 84.0 0.467 H -70.7 -39.6 84.0 0.467 0.0 HOH
 2.804
 O
 O
GLN B:252 B:231 86.0 0.478 H -58.8 -38.4 86.0 0.478 0.0 HOH
 7.291
 N
 O
GLN C:252 C:231 88.0 0.489 H -65.7 -40.7 NA NA NA
GLN D:252 D:231 83.0 0.461 H -56.4 -39.4 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 GLN A:231 A:231 88.0 0.489 H -59.7 -29.5 88.0 0.489 0.0 HOH
 6.774
 C
 O
GLN B:231 B:231 75.0 0.417 H -65.4 -51.6 75.0 0.417 0.0 HOH
 3.498
 OE1
 O
GLN C:231 C:231 81.0 0.45 H -53.6 -51.1 NA NA NA
GLN D:231 D:231 87.0 0.483 H -59.4 -38.2 NA NA NA
GLN E:231 E:231 81.0 0.45 H -68.0 -37.1 NA NA NA
GLN F:231 F:231 80.0 0.444 H -58.7 -30.7 NA NA NA
GLN G:231 G:231 79.0 0.439 H -71.3 -51.9 NA NA NA
GLN H:231 H:231 82.0 0.456 H -74.2 -43.2 NA NA NA
GLN I:231 I:231 78.0 0.433 H -72.2 -34.7 NA NA NA
GLN J:231 J:231 65.0 0.361 H -68.0 -33.5 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 GLN A:253 A:231 84.0 0.467 H -64.4 -38.2 84.0 0.467 0.0 SO4
HOH
 9.835
2.456
 O
HE21
 O1
O
GLN B:253 B:231 80.0 0.444 H -63.6 -37.3 80.0 0.444 0.0 HOH
 2.890
 OE1
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:253 A:231 85.0 0.472 H -63.1 -37.3 85.0 0.472 0.0 SO4
HOH
 9.779
2.829
 O
O
 O2
O
GLN B:253 B:231 84.0 0.467 H -61.0 -38.4 84.0 0.467 0.0 HOH
 5.438
 OE1
 O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLN A:231 A:231 84.0 0.467 H -70.2 -34.9 84.0 0.467 0.0 HOH
 3.186
 OE1
 O
GLN B:231 B:231 75.0 0.417 H -58.9 -41.0 75.0 0.417 0.0 HOH
 3.419
 NE2
 O
GLN C:231 C:231 78.0 0.433 H -65.0 -37.9 NA NA NA
GLN D:231 D:231 78.0 0.433 H -66.1 -38.8 NA NA NA
GLN E:231 E:231 78.0 0.433 H -63.2 -44.1 NA NA NA
GLN F:231 F:231 80.0 0.444 H -66.1 -36.9 NA NA NA
GLN G:231 G:231 82.0 0.456 H -77.2 -33.8 NA NA NA
GLN H:231 H:231 76.0 0.422 H -59.9 -44.3 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLN A:231 A:231 85.0 0.472 H -61.5 -34.0 85.0 0.472 0.0 SO4
HOH
 9.908
3.325
 O
OE1
 O1
O
GLN B:231 B:231 77.0 0.428 H -61.0 -40.6 77.0 0.428 0.0 HOH
 2.519
 O
 O
GLN C:231 C:231 79.0 0.439 H -63.0 -38.6 NA NA NA
GLN D:231 D:231 81.0 0.45 H -56.5 -40.4 NA NA NA
GLN E:231 E:231 82.0 0.456 H -66.6 -41.1 NA NA NA
GLN F:231 F:231 78.0 0.433 H -61.1 -38.5 NA NA NA
GLN G:231 G:231 86.0 0.478 H -65.5 -37.9 NA NA NA
GLN H:231 H:231 79.0 0.439 H -56.5 -45.5 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 GLN A:231 A:231 84.0 0.467 H -65.6 -39.2 84.0 0.467 0.0 SO4
HOH
 9.782
2.735
 O
O
 O4
O
GLN B:231 B:231 79.0 0.439 H -65.9 -37.6 79.0 0.439 0.0 SO4
HOH
 9.879
2.976
 O
O
 O1
O
GLN C:231 C:231 78.0 0.433 H -63.3 -38.7 NA NA NA
GLN D:231 D:231 81.0 0.45 H -60.8 -37.3 NA NA NA
GLN E:231 E:231 85.0 0.472 H -72.8 -36.3 NA NA NA
GLN F:231 F:231 82.0 0.456 H -65.2 -41.4 NA NA NA
GLN G:231 G:231 86.0 0.478 H -65.8 -39.3 NA NA NA
GLN H:231 H:231 83.0 0.461 H -65.3 -38.4 NA NA NA
GLN I:231 I:231 79.0 0.439 H -57.2 -36.6 NA NA NA
GLN J:231 J:231 79.0 0.439 H -61.5 -44.2 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 GLN A:252 A:231 86.0 0.478 H -65.4 -38.7 86.0 0.478 0.0 HOH
 6.814
 N
 O
GLN B:252 B:231 90.0 0.5 H -64.6 -40.5 90.0 0.5 0.0 HOH
 4.182
 HE22
 O
GLN C:252 C:231 90.0 0.5 H -65.1 -37.9 NA NA NA
GLN D:252 D:231 92.0 0.511 H -63.3 -40.6 NA NA NA
GLN E:252 E:231 84.0 0.467 H -62.9 -39.8 NA NA NA
GLN F:252 F:231 90.0 0.5 H -65.0 -38.9 NA NA NA
GLN G:252 G:231 86.0 0.478 H -65.0 -39.1 NA NA NA
GLN H:252 H:231 82.0 0.456 H -66.3 -42.5 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:253 A:231 82.0 0.456 H -62.7 -39.7 82.0 0.456 0.0 SO4
HOH
 9.790
2.891
 O
O
 O1
O
GLN B:253 B:231 84.0 0.467 H -62.1 -40.3 84.0 0.467 0.0 HOH
 5.076
 OE1
 O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 GLN A:253 A:231 80.0 0.444 H -58.2 -45.1 80.0 0.444 0.0 HOH
 2.966
 OE1
 O
GLN B:253 B:231 81.0 0.45 H -58.9 -38.7 81.0 0.45 0.0 HOH
 2.789
 O
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 GLN A:253 A:231 87.0 0.483 H -55.2 -41.4 87.0 0.483 0.0 SO4
HOH
 9.993
2.785
 O
O
 O2
O
GLN B:253 B:231 78.0 0.433 H -58.0 -38.1 78.0 0.433 0.0 HOH
 2.762
 O
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:253 A:231 87.0 0.483 H -61.6 -39.6 87.0 0.483 0.0 SO4
HOH
 9.964
2.774
 O
OE1
 O1
O
GLN B:253 B:231 84.0 0.467 H -61.9 -40.1 84.0 0.467 0.0 HOH
 2.777
 O
 O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:253 A:231 90.0 0.5 H -61.8 -38.3 90.0 0.5 0.0 HOH
 2.745
 OE1
 O
GLN B:253 B:231 86.0 0.478 H -61.4 -40.7 86.0 0.478 0.0 HOH
 2.999
 OE1
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:253 A:231 84.0 0.467 H -63.3 -38.9 84.0 0.467 0.0 SO4
HOH
 9.814
2.573
 O
OE1
 O2
O
GLN B:253 B:231 84.0 0.467 H -63.4 -37.8 84.0 0.467 0.0 HOH
 1.932
 HE22
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:253 A:231 91.0 0.506 H -59.8 -42.7 91.0 0.506 0.0 HOH
 5.760
 OE1
 O
GLN B:253 B:231 91.0 0.506 H -58.8 -38.7 91.0 0.506 0.0 HOH
 7.496
 N
 O
GLN C:253 C:231 76.0 0.422 H -59.5 -41.9 NA NA NA
GLN D:253 D:231 85.0 0.472 H -60.0 -43.5 NA NA NA
GLN E:253 E:231 82.0 0.456 H -61.9 -43.4 NA NA NA
GLN F:253 F:231 85.0 0.472 H -59.4 -43.4 NA NA NA
GLN G:253 G:231 88.0 0.489 H -60.6 -43.7 NA NA NA
GLN H:253 H:231 80.0 0.444 H -61.1 -42.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 GLN A:266 A:266 86.0 0.478 H -62.5 -40.3