Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107556068 . C A CCDS5749.1:NM_000108.3:c.802Cag>Aag_NP_000099.2:p.268Q>K Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 GLN A:254 A:233 55.0 0.306 T -74.7 -10.7 55.0 0.306 0.0 HOH
 2.857
 OE1
 O
GLN B:254 B:233 59.0 0.328 H -81.7 -16.7 59.0 0.328 0.0 HOH
 2.708
 OE1
 O
GLN C:254 C:233 59.0 0.328 H -70.3 -18.1 NA NA NA
GLN D:254 D:233 55.0 0.306 H -79.2 -16.8 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 GLN A:233 A:233 59.0 0.328 H -64.2 -27.0 59.0 0.328 0.0 HOH
 3.288
 NE2
 O
GLN B:233 B:233 50.0 0.278 H -73.3 -22.1 50.0 0.278 0.0 HOH
 2.713
 NE2
 O
GLN C:233 C:233 59.0 0.328 H -67.5 -16.6 NA NA NA
GLN D:233 D:233 57.0 0.317 T -80.1 9.2 NA NA NA
GLN E:233 E:233 58.0 0.322 T -93.8 1.2 NA NA NA
GLN F:233 F:233 54.0 0.3 H -80.3 -9.9 NA NA NA
GLN G:233 G:233 49.0 0.272 T -89.7 -11.1 NA NA NA
GLN H:233 H:233 47.0 0.261 T -89.0 -17.2 NA NA NA
GLN I:233 I:233 57.0 0.317 H -69.2 -32.4 NA NA NA
GLN J:233 J:233 48.0 0.267 H -86.2 -18.0 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 GLN A:255 A:233 55.0 0.306 H -70.5 -21.2 55.0 0.306 0.0 SO4
HOH
 5.227
2.270
 HA
HE21
 O1
O
GLN B:255 B:233 54.0 0.3 H -70.1 -19.6 54.0 0.3 0.0 SO4
HOH
 5.602
1.986
 HA
HE21
 O3
O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:255 A:233 49.0 0.272 H -69.0 -24.2 49.0 0.272 0.0 SO4
HOH
 5.224
2.416
 HA
HE21
 O2
O
GLN B:255 B:233 51.0 0.283 H -69.0 -21.5 51.0 0.283 0.0 SO4
HOH
 5.687
2.080
 HA
HE21
 O3
O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLN A:233 A:233 51.0 0.283 T -98.8 -16.4 51.0 0.283 0.0 SO4
HOH
 6.734
2.699
 CA
OE1
 O1
O
GLN B:233 B:233 47.0 0.261 T -93.9 -17.2 47.0 0.261 0.0 SO4
HOH
 6.076
2.834
 O
OE1
 O4
O
GLN C:233 C:233 49.0 0.272 T -90.6 -18.0 NA NA NA
GLN D:233 D:233 52.0 0.289 T -98.7 -18.7 NA NA NA
GLN E:233 E:233 45.0 0.25 H -77.3 -17.5 NA NA NA
GLN F:233 F:233 47.0 0.261 H -77.0 -17.6 NA NA NA
GLN G:233 G:233 49.0 0.272 H -74.8 -23.8 NA NA NA
GLN H:233 H:233 35.0 0.194 H -79.1 -13.7 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLN A:233 A:233 46.0 0.256 T -81.6 -12.5 46.0 0.256 0.0 SO4
HOH
 6.308
2.684
 O
OE1
 O1
O
GLN B:233 B:233 48.0 0.267 H -81.5 -14.2 48.0 0.267 0.0 SO4
HOH
 6.375
2.692
 O
OE1
 O4
O
GLN C:233 C:233 48.0 0.267 H -77.9 -14.6 NA NA NA
GLN D:233 D:233 49.0 0.272 H -81.4 -9.0 NA NA NA
GLN E:233 E:233 48.0 0.267 H -77.9 -17.5 NA NA NA
GLN F:233 F:233 51.0 0.283 H -80.5 -15.8 NA NA NA
GLN G:233 G:233 47.0 0.261 H -80.9 -17.4 NA NA NA
GLN H:233 H:233 46.0 0.256 H -80.4 -11.4 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 GLN A:233 A:233 54.0 0.3 H -77.6 -14.2 54.0 0.3 0.0 SO4
HOH
 6.431
2.704
 O
O
 O4
O
GLN B:233 B:233 58.0 0.322 H -72.4 -16.2 58.0 0.322 0.0 SO4
HOH
 6.195
2.715
 O
OE1
 O3
O
GLN C:233 C:233 58.0 0.322 H -77.8 -18.0 NA NA NA
GLN D:233 D:233 54.0 0.3 H -79.4 -13.2 NA NA NA
GLN E:233 E:233 57.0 0.317 H -78.8 -15.4 NA NA NA
GLN F:233 F:233 58.0 0.322 H -79.9 -14.6 NA NA NA
GLN G:233 G:233 58.0 0.322 H -74.3 -19.6 NA NA NA
GLN H:233 H:233 57.0 0.317 H -73.3 -19.8 NA NA NA
GLN I:233 I:233 48.0 0.267 H -87.3 -11.3 NA NA NA
GLN J:233 J:233 58.0 0.322 H -75.6 -19.1 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 GLN A:254 A:233 51.0 0.283 H -70.2 -21.0 51.0 0.283 0.0 HOH
 2.116
 HE21
 O
GLN B:254 B:233 56.0 0.311 H -70.2 -20.8 56.0 0.311 0.0 HOH
 2.781
 OE1
 O
GLN C:254 C:233 52.0 0.289 H -70.8 -21.7 NA NA NA
GLN D:254 D:233 47.0 0.261 H -68.1 -18.9 NA NA NA
GLN E:254 E:233 50.0 0.278 H -69.3 -17.1 NA NA NA
GLN F:254 F:233 45.0 0.25 H -71.2 -21.1 NA NA NA
GLN G:254 G:233 43.0 0.239 H -69.8 -19.9 NA NA NA
GLN H:254 H:233 47.0 0.261 H -72.0 -21.3 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:255 A:233 47.0 0.261 H -72.5 -19.1 47.0 0.261 0.0 SO4
HOH
 5.236
2.212
 HA
HE21
 O1
O
GLN B:255 B:233 51.0 0.283 H -72.3 -17.7 51.0 0.283 0.0 SO4
HOH
 5.567
2.165
 HA
HE21
 O3
O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 GLN A:255 A:233 53.0 0.294 H -70.5 -15.0 53.0 0.294 0.0 HOH
 2.759
 OE1
 O
GLN B:255 B:233 59.0 0.328 T -77.3 -13.2 59.0 0.328 0.0 HOH
 2.903
 OE1
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 GLN A:255 A:233 47.0 0.261 H -72.0 -17.9 47.0 0.261 0.0 SO4
HOH
 6.105
2.802
 O
OE1
 O2
O
GLN B:255 B:233 55.0 0.306 H -71.8 -23.8 55.0 0.306 0.0 SO4
HOH
 6.368
2.867
 O
OE1
 O4
O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:255 A:233 51.0 0.283 H -70.2 -22.6 51.0 0.283 0.0 SO4
HOH
 5.424
2.142
 HA
HE21
 O1
O
GLN B:255 B:233 52.0 0.289 H -69.6 -22.5 52.0 0.289 0.0 SO4
HOH
 5.829
2.107
 HA
HE21
 O3
O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:255 A:233 49.0 0.272 H -75.3 -18.8 49.0 0.272 0.0 SO4
HOH
 5.647
2.662
 HA
OE1
 O4
O
GLN B:255 B:233 49.0 0.272 H -73.9 -17.1 49.0 0.272 0.0 SO4
HOH
 5.868
2.152
 HA
HE21
 O3
O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:255 A:233 52.0 0.289 H -70.8 -21.9 52.0 0.289 0.0 SO4
HOH
 5.343
2.017
 HA
HE21
 O2
O
GLN B:255 B:233 54.0 0.3 H -71.9 -21.3 54.0 0.3 0.0 SO4
HOH
 5.592
2.053
 HA
HE21
 O3
O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLN A:255 A:233 53.0 0.294 H -76.7 -13.7 53.0 0.294 0.0 SO4
HOH
 6.093
2.660
 HA
OE1
 O2
O
GLN B:255 B:233 53.0 0.294 H -80.0 -15.9 53.0 0.294 0.0 SO4
HOH
 6.953
2.901
 HA
OE1
 O4
O
GLN C:255 C:233 54.0 0.3 H -76.2 -15.2 NA NA NA
GLN D:255 D:233 55.0 0.306 H -76.7 -15.8 NA NA NA
GLN E:255 E:233 54.0 0.3 H -78.2 -15.0 NA NA NA
GLN F:255 F:233 53.0 0.294 H -77.7 -15.6 NA NA NA
GLN G:255 G:233 50.0 0.278 H -76.7 -14.9 NA NA NA
GLN H:255 H:233 53.0 0.294 H -77.6 -15.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 GLN A:268 A:268 46.0 0.256 H -75.0 -13.2