Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107556095 . A C CCDS5749.1:NM_000108.3:c.829Aag>Cag_NP_000099.2:p.277K>Q Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 LYS A:263 A:242 67.0 0.335 E -109.9 146.5 67.0 0.335 0.0 HOH
 8.618
 N
 O
LYS B:263 B:242 93.0 0.465 E -101.8 143.6 93.0 0.465 0.0
LYS C:263 C:242 89.0 0.445 E -101.1 143.7 NA NA NA
LYS D:263 D:242 83.0 0.415 E -99.7 139.3 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 LYS A:242 A:242 69.0 0.345 E -114.7 151.5 69.0 0.345 0.0 HOH
 5.153
 CA
 O
LYS B:242 B:242 78.0 0.39 E -129.5 140.3 78.0 0.39 0.0 HOH
 9.503
 O
 O
LYS C:242 C:242 89.0 0.445 E -106.7 157.3 NA NA NA
LYS D:242 D:242 87.0 0.435 E -131.6 157.9 NA NA NA
LYS E:242 E:242 63.0 0.315 E -135.5 140.0 NA NA NA
LYS F:242 F:242 66.0 0.33 E -115.4 158.1 NA NA NA
LYS G:242 G:242 79.0 0.395 E -90.7 145.5 NA NA NA
LYS H:242 H:242 72.0 0.36 -129.5 139.1 NA NA NA
LYS I:242 I:242 89.0 0.445 E -111.6 177.2 NA NA NA
LYS J:242 J:242 74.0 0.37 E -121.8 162.0 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 LYS A:264 A:242 92.0 0.46 E -105.8 142.3 92.0 0.46 0.0 HOH
 2.803
 HG3
 O
LYS B:264 B:242 69.0 0.345 E -106.5 146.8 69.0 0.345 0.0 HOH
 2.706
 HA
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 LYS A:264 A:242 59.0 0.295 E -105.2 143.0 59.0 0.295 0.0
LYS B:264 B:242 67.0 0.335 E -105.1 145.7 67.0 0.335 0.0 HOH
 4.937
 HA
 O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 LYS A:242 A:242 69.0 0.345 E -100.7 135.9 69.0 0.345 0.0 NAD
HOH
 3.575
7.701
 CA
N
 N1A
O
LYS B:242 B:242 74.0 0.37 E -94.0 133.0 74.0 0.37 0.0 NAD
HOH
 3.934
5.851
 CA
O
 N1A
O
LYS C:242 C:242 105.0 0.525 E -104.1 127.2 NA NA NA
LYS D:242 D:242 63.0 0.315 -115.1 133.6 NA NA NA
LYS E:242 E:242 92.0 0.46 E -102.1 132.0 NA NA NA
LYS F:242 F:242 60.0 0.3 E -106.5 139.1 NA NA NA
LYS G:242 G:242 76.0 0.38 E -106.0 126.7 NA NA NA
LYS H:242 H:242 98.0 0.49 E -98.1 125.1 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 LYS A:242 A:242 58.0 0.29 E -116.9 140.0 58.0 0.29 0.0 NAI
 4.198
 CA
 N1A
LYS B:242 B:242 76.0 0.38 E -99.9 146.4 76.0 0.38 0.0 NAI
HOH
 5.271
3.593
 CA
CA
 N1A
O
LYS C:242 C:242 90.0 0.45 E -110.8 136.5 NA NA NA
LYS D:242 D:242 61.0 0.305 E -118.3 146.4 NA NA NA
LYS E:242 E:242 91.0 0.455 E -112.9 152.1 NA NA NA
LYS F:242 F:242 68.0 0.34 E -110.2 139.4 NA NA NA
LYS G:242 G:242 81.0 0.405 E -104.1 128.9 NA NA NA
LYS H:242 H:242 95.0 0.475 E -102.9 140.3 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 LYS A:242 A:242 69.0 0.345 E -112.8 152.0 69.0 0.345 0.0 HOH
 2.828
 NZ
 O
LYS B:242 B:242 87.0 0.435 E -110.2 148.6 87.0 0.435 0.0 HOH
 4.263
 CA
 O
LYS C:242 C:242 85.0 0.425 E -123.8 145.9 NA NA NA
LYS D:242 D:242 67.0 0.335 E -109.9 138.3 NA NA NA
LYS E:242 E:242 85.0 0.425 E -115.7 154.3 NA NA NA
LYS F:242 F:242 107.0 0.535 E -104.8 142.9 NA NA NA
LYS G:242 G:242 70.0 0.35 E -110.2 147.1 NA NA NA
LYS H:242 H:242 81.0 0.405 E -118.7 151.9 NA NA NA
LYS I:242 I:242 72.0 0.36 E -105.2 149.6 NA NA NA
LYS J:242 J:242 113.0 0.565 E -104.6 134.1 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 LYS A:263 A:242 83.0 0.415 E -107.4 143.3 83.0 0.415 0.0
LYS B:263 B:242 67.0 0.335 E -108.8 142.6 67.0 0.335 0.0 HOH
 7.184
 HD2
 O
LYS C:263 C:242 77.0 0.385 E -107.5 145.4 NA NA NA
LYS D:263 D:242 58.0 0.29 E -110.8 145.2 NA NA NA
LYS E:263 E:242 70.0 0.35 E -108.7 145.6 NA NA NA
LYS F:263 F:242 79.0 0.395 E -111.8 147.9 NA NA NA
LYS G:263 G:242 75.0 0.375 E -108.4 142.8 NA NA NA
LYS H:263 H:242 93.0 0.465 E -108.3 147.1 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 LYS A:264 A:242 60.0 0.3 E -103.7 144.8 60.0 0.3 0.0 HOH
 2.850
 HA
 O
LYS B:264 B:242 72.0 0.36 E -104.2 145.0 72.0 0.36 0.0 HOH
 5.350
 HA
 O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 LYS A:264 A:242 72.0 0.36 E -106.5 148.8 72.0 0.36 0.0 HOH
 5.856
 CA
 O
LYS B:264 B:242 75.0 0.375 E -109.1 154.9 75.0 0.375 0.0 HOH
 3.464
 CA
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 LYS A:264 A:242 74.0 0.37 E -103.5 143.1 74.0 0.37 0.0 HOH
 2.764
 NZ
 O
LYS B:264 B:242 71.0 0.355 E -112.5 146.6 71.0 0.355 0.0 HOH
 3.769
 CA
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 LYS A:264 A:242 86.0 0.43 E -105.6 141.2 86.0 0.43 0.0 HOH
 2.394
 HE3
 O
LYS B:264 B:242 58.0 0.29 E -106.9 143.9 58.0 0.29 0.0 HOH
 3.021
 HA
 O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 LYS A:264 A:242 82.0 0.41 E -106.2 146.3 82.0 0.41 0.0 HOH
 2.823
 HA
 O
LYS B:264 B:242 59.0 0.295 E -106.0 146.4 59.0 0.295 0.0 HOH
 2.656
 HA
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 LYS A:264 A:242 63.0 0.315 E -107.3 147.1 63.0 0.315 0.0 HOH
 2.616
 HA
 O
LYS B:264 B:242 72.0 0.36 E -107.5 148.0 72.0 0.36 0.0 HOH
 2.911
 HA
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 LYS A:264 A:242 67.0 0.335 E -114.8 160.3 67.0 0.335 0.0 HOH
 3.460
 HB2
 O
LYS B:264 B:242 96.0 0.48 E -108.9 155.4 96.0 0.48 0.0
LYS C:264 C:242 63.0 0.315 E -115.7 158.6 NA NA NA
LYS D:264 D:242 78.0 0.39 E -114.0 165.1 NA NA NA
LYS E:264 E:242 90.0 0.45 E -114.2 155.7 NA NA NA
LYS F:264 F:242 98.0 0.49 E -112.4 150.5 NA NA NA
LYS G:264 G:242 79.0 0.395 E -113.7 155.3 NA NA NA
LYS H:264 H:242 77.0 0.385 E -113.8 153.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 LYS A:277 A:277 77.0 0.385 E -99.3 135.2